Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g22148 | UBIQUITIN-CONJUGATING ENZYME E2 |
Clavulariidae_g22149 | CENTAURIN/ARF |
Clavulariidae_g2215 | |
Clavulariidae_g22150 | CELLULAR TUMOR ANTIGEN P53 |
Clavulariidae_g22151 | OXIDASE/PEROXIDASE |
Clavulariidae_g22152 | WNT RELATED |
Clavulariidae_g22153 | LEUCINE-, GLUTAMATE- AND LYSINE-RICH PROTEIN 1 |
Clavulariidae_g22154 | TRANSCRIPTION FACTOR 19 |
Clavulariidae_g22155 | DELTA-1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE 1, ISOFORM A-RELATED |
Clavulariidae_g22156 | |
Clavulariidae_g22157 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g22158 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g22159 | |
Clavulariidae_g2216 | |
Clavulariidae_g22160 | |
Clavulariidae_g22161 | |
Clavulariidae_g22162 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g22163 | |
Clavulariidae_g22164 | |
Clavulariidae_g22165 | THIOESTERASE 1/PROTEASE 1/LYSOPHOSPHOLIPASE L1 |
Clavulariidae_g22166 | ATP-BINDING CASSETTE SUB-FAMILY C |
Clavulariidae_g22167 | |
Clavulariidae_g22168 | |
Clavulariidae_g22169 | |
Clavulariidae_g2217 | |
Clavulariidae_g22170 | F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g22171 | DUF3504 DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g22172 | |
Clavulariidae_g22173 | |
Clavulariidae_g22174 | |
Clavulariidae_g22175 | COLLAGEN ALPHA |
Clavulariidae_g22176 | |
Clavulariidae_g22177 | |
Clavulariidae_g22178 | PROTEIN CBG23764 |
Clavulariidae_g22179 | |
Clavulariidae_g2218 | SI:CH211-108C17.2-RELATED-RELATED |
Clavulariidae_g22180 | PROTEIN CBG26694 |
Clavulariidae_g22181 | |
Clavulariidae_g22182 | |
Clavulariidae_g22183 | KH DOMAIN CONTAINING RNA BINDING PROTEIN |
Clavulariidae_g22184 | |
Clavulariidae_g22185 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g22186 | |
Clavulariidae_g22187 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g22188 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g22189 | KH DOMAIN CONTAINING RNA BINDING PROTEIN |
Clavulariidae_g2219 | BARDET-BIEDL SYNDROME PROTEIN 5 |
Clavulariidae_g22190 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g22191 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g22192 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |