About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g22148UBIQUITIN-CONJUGATING ENZYME E2
Clavulariidae_g22149CENTAURIN/ARF
Clavulariidae_g2215
Clavulariidae_g22150CELLULAR TUMOR ANTIGEN P53
Clavulariidae_g22151OXIDASE/PEROXIDASE
Clavulariidae_g22152WNT RELATED
Clavulariidae_g22153LEUCINE-, GLUTAMATE- AND LYSINE-RICH PROTEIN 1
Clavulariidae_g22154TRANSCRIPTION FACTOR 19
Clavulariidae_g22155DELTA-1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE 1, ISOFORM A-RELATED
Clavulariidae_g22156
Clavulariidae_g22157TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g22158ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22159
Clavulariidae_g2216
Clavulariidae_g22160
Clavulariidae_g22161
Clavulariidae_g22162CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g22163
Clavulariidae_g22164
Clavulariidae_g22165THIOESTERASE 1/PROTEASE 1/LYSOPHOSPHOLIPASE L1
Clavulariidae_g22166ATP-BINDING CASSETTE SUB-FAMILY C
Clavulariidae_g22167
Clavulariidae_g22168
Clavulariidae_g22169
Clavulariidae_g2217
Clavulariidae_g22170F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g22171DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22172
Clavulariidae_g22173
Clavulariidae_g22174
Clavulariidae_g22175COLLAGEN ALPHA
Clavulariidae_g22176
Clavulariidae_g22177
Clavulariidae_g22178PROTEIN CBG23764
Clavulariidae_g22179
Clavulariidae_g2218SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g22180PROTEIN CBG26694
Clavulariidae_g22181
Clavulariidae_g22182
Clavulariidae_g22183KH DOMAIN CONTAINING RNA BINDING PROTEIN
Clavulariidae_g22184
Clavulariidae_g22185REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22186
Clavulariidae_g22187ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22188ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22189KH DOMAIN CONTAINING RNA BINDING PROTEIN
Clavulariidae_g2219BARDET-BIEDL SYNDROME PROTEIN 5
Clavulariidae_g22190ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22191REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22192REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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