Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g22283 | |
Clavulariidae_g22284 | INTELECTIN |
Clavulariidae_g22285 | PROTEIN CBG23764 |
Clavulariidae_g22286 | |
Clavulariidae_g22287 | DNA-BINDING PROTEIN-RELATED-RELATED |
Clavulariidae_g22288 | COLLAGEN ALPHA |
Clavulariidae_g22289 | |
Clavulariidae_g2229 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g22290 | |
Clavulariidae_g22291 | INTELECTIN |
Clavulariidae_g22292 | AGAP003327-PA |
Clavulariidae_g22293 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g22294 | SERINE-THREONINE PROTEIN KINASE |
Clavulariidae_g22295 | PROTEIN B, PUTATIVE-RELATED-RELATED |
Clavulariidae_g22296 | |
Clavulariidae_g22297 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g22298 | |
Clavulariidae_g22299 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g223 | PROTEIN CBG26694 |
Clavulariidae_g2230 | REVERSE TRANSCRIPTASES |
Clavulariidae_g22300 | GLYCOSYLTRANSFERASE STELLO1-RELATED |
Clavulariidae_g22301 | |
Clavulariidae_g22302 | GLYCOSYLTRANSFERASE STELLO1-RELATED |
Clavulariidae_g22303 | GLYCOSYLTRANSFERASE STELLO1-RELATED |
Clavulariidae_g22304 | COLLAGEN ALPHA |
Clavulariidae_g22305 | PROTEIN CBG23764 |
Clavulariidae_g22306 | ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED |
Clavulariidae_g22307 | UNCHARACTERIZED |
Clavulariidae_g22308 | DNA HELICASE RECQ FAMILY MEMBER |
Clavulariidae_g22309 | THAP DOMAIN-CONTAINING PROTEIN 6 |
Clavulariidae_g2231 | EUKARYOTIC ELONGATION FACTOR 2 KINASE-RELATED |
Clavulariidae_g22310 | NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED |
Clavulariidae_g22311 | |
Clavulariidae_g22312 | REVERSE TRANSCRIPTASES |
Clavulariidae_g22313 | |
Clavulariidae_g22314 | |
Clavulariidae_g22315 | DNA HELICASE RECQ FAMILY MEMBER |
Clavulariidae_g22316 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g22317 | |
Clavulariidae_g22318 | |
Clavulariidae_g22319 | REVERSE TRANSCRIPTASES |
Clavulariidae_g2232 | RING-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g22320 | EXPRESSED PROTEIN |
Clavulariidae_g22321 | |
Clavulariidae_g22322 | DNA HELICASE RECQ FAMILY MEMBER |
Clavulariidae_g22323 | PENTRAXIN |
Clavulariidae_g22324 | |
Clavulariidae_g22325 | |
Clavulariidae_g22326 | |
Clavulariidae_g22327 | DNA HELICASE RECQ FAMILY MEMBER |