About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g22283
Clavulariidae_g22284INTELECTIN
Clavulariidae_g22285PROTEIN CBG23764
Clavulariidae_g22286
Clavulariidae_g22287DNA-BINDING PROTEIN-RELATED-RELATED
Clavulariidae_g22288COLLAGEN ALPHA
Clavulariidae_g22289
Clavulariidae_g2229ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g22290
Clavulariidae_g22291INTELECTIN
Clavulariidae_g22292AGAP003327-PA
Clavulariidae_g22293ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g22294SERINE-THREONINE PROTEIN KINASE
Clavulariidae_g22295PROTEIN B, PUTATIVE-RELATED-RELATED
Clavulariidae_g22296
Clavulariidae_g22297REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22298
Clavulariidae_g22299TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g223PROTEIN CBG26694
Clavulariidae_g2230REVERSE TRANSCRIPTASES
Clavulariidae_g22300GLYCOSYLTRANSFERASE STELLO1-RELATED
Clavulariidae_g22301
Clavulariidae_g22302GLYCOSYLTRANSFERASE STELLO1-RELATED
Clavulariidae_g22303GLYCOSYLTRANSFERASE STELLO1-RELATED
Clavulariidae_g22304COLLAGEN ALPHA
Clavulariidae_g22305PROTEIN CBG23764
Clavulariidae_g22306ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Clavulariidae_g22307UNCHARACTERIZED
Clavulariidae_g22308DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g22309THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g2231EUKARYOTIC ELONGATION FACTOR 2 KINASE-RELATED
Clavulariidae_g22310NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
Clavulariidae_g22311
Clavulariidae_g22312REVERSE TRANSCRIPTASES
Clavulariidae_g22313
Clavulariidae_g22314
Clavulariidae_g22315DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g22316CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g22317
Clavulariidae_g22318
Clavulariidae_g22319REVERSE TRANSCRIPTASES
Clavulariidae_g2232RING-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22320EXPRESSED PROTEIN
Clavulariidae_g22321
Clavulariidae_g22322DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g22323PENTRAXIN
Clavulariidae_g22324
Clavulariidae_g22325
Clavulariidae_g22326
Clavulariidae_g22327DNA HELICASE RECQ FAMILY MEMBER
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