About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g22418COLLAGEN ALPHA
Clavulariidae_g22419
Clavulariidae_g2242HEME OXYGENASE
Clavulariidae_g22420REVERSE TRANSCRIPTASES
Clavulariidae_g22421THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g22422L1 TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g22423SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g22424ZGC:195170
Clavulariidae_g22425MUCIN 4-RELATED
Clavulariidae_g22426SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g22427ZGC:195170
Clavulariidae_g22428MUCIN 4-RELATED
Clavulariidae_g22429SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g2243
Clavulariidae_g22430ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22431EXPRESSED PROTEIN
Clavulariidae_g22432
Clavulariidae_g22433
Clavulariidae_g22434FATTY ACID SYNTHASE
Clavulariidae_g22435TRANSPOSON
Clavulariidae_g22436
Clavulariidae_g22437TRANSPOSABLE ELEMENT TC3 TRANSPOSASE-LIKE PROTEIN
Clavulariidae_g22438ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22439TUMOR NECROSIS FACTOR RECEPTOR
Clavulariidae_g2244INTELECTIN
Clavulariidae_g22440EXPRESSED PROTEIN
Clavulariidae_g22441
Clavulariidae_g22442PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22443PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22444THAP DOMAIN PROTEIN
Clavulariidae_g22445DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22446SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g22447OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
Clavulariidae_g22448REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22449ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g2245REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22450PROTEIN CBG26694
Clavulariidae_g22451PROTEIN CBG26694
Clavulariidae_g22452
Clavulariidae_g22453
Clavulariidae_g22454TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g22455
Clavulariidae_g22456TRANSPOSASE
Clavulariidae_g22457DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g22458
Clavulariidae_g22459REPLICATION PROTEIN A-RELATED
Clavulariidae_g2246REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22460
Clavulariidae_g22461
Clavulariidae_g22462DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
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