Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g22328 | ADHESION G-PROTEIN COUPLED RECEPTOR |
Clavulariidae_g22329 | |
Clavulariidae_g2233 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g22330 | |
Clavulariidae_g22331 | |
Clavulariidae_g22332 | PROTEIN CBG26694 |
Clavulariidae_g22333 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g22334 | ADHESION G PROTEIN-COUPLED RECEPTOR G7 |
Clavulariidae_g22335 | REVERSE TRANSCRIPTASES |
Clavulariidae_g22336 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g22337 | MULTICOPPER OXIDASE-RELATED |
Clavulariidae_g22338 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g22339 | UNCHARACTERIZED |
Clavulariidae_g2234 | RING-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g22340 | MADF DOMAIN TRANSCRIPTION FACTOR |
Clavulariidae_g22341 | TRANSPOSON |
Clavulariidae_g22342 | MULTICOPPER OXIDASE-RELATED |
Clavulariidae_g22343 | PROTEIN CBG26694 |
Clavulariidae_g22344 | ENDONUCLEASE-RELATED |
Clavulariidae_g22345 | |
Clavulariidae_g22346 | PROTEIN CBG23764 |
Clavulariidae_g22347 | DNA-BINDING PROTEIN-RELATED-RELATED |
Clavulariidae_g22348 | COLLAGEN ALPHA |
Clavulariidae_g22349 | |
Clavulariidae_g2235 | UNCHARACTERIZED |
Clavulariidae_g22350 | |
Clavulariidae_g22351 | |
Clavulariidae_g22352 | |
Clavulariidae_g22353 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g22354 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g22355 | PROTEIN B, PUTATIVE-RELATED-RELATED |
Clavulariidae_g22356 | SENTRIN/SUMO-SPECIFIC PROTEASE |
Clavulariidae_g22357 | PENTRAXIN |
Clavulariidae_g22358 | PROTEIN B, PUTATIVE-RELATED-RELATED |
Clavulariidae_g22359 | PROTEIN CBG26694 |
Clavulariidae_g2236 | |
Clavulariidae_g22360 | PROTEIN CBG26694 |
Clavulariidae_g22361 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g22362 | REVERSE TRANSCRIPTASE |
Clavulariidae_g22363 | SNAC DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g22364 | TRANSPOSABLE ELEMENT TC3 TRANSPOSASE-LIKE PROTEIN |
Clavulariidae_g22365 | |
Clavulariidae_g22366 | |
Clavulariidae_g22367 | TMEM26 PROTEIN |
Clavulariidae_g22368 | |
Clavulariidae_g22369 | RING FINGER PROTEIN 17 |
Clavulariidae_g2237 | DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g22370 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
Clavulariidae_g22371 | NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12 |
Clavulariidae_g22372 | NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12 |