About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g22328ADHESION G-PROTEIN COUPLED RECEPTOR
Clavulariidae_g22329
Clavulariidae_g2233ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22330
Clavulariidae_g22331
Clavulariidae_g22332PROTEIN CBG26694
Clavulariidae_g22333REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22334ADHESION G PROTEIN-COUPLED RECEPTOR G7
Clavulariidae_g22335REVERSE TRANSCRIPTASES
Clavulariidae_g22336REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22337MULTICOPPER OXIDASE-RELATED
Clavulariidae_g22338TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g22339UNCHARACTERIZED
Clavulariidae_g2234RING-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22340MADF DOMAIN TRANSCRIPTION FACTOR
Clavulariidae_g22341TRANSPOSON
Clavulariidae_g22342MULTICOPPER OXIDASE-RELATED
Clavulariidae_g22343PROTEIN CBG26694
Clavulariidae_g22344ENDONUCLEASE-RELATED
Clavulariidae_g22345
Clavulariidae_g22346PROTEIN CBG23764
Clavulariidae_g22347DNA-BINDING PROTEIN-RELATED-RELATED
Clavulariidae_g22348COLLAGEN ALPHA
Clavulariidae_g22349
Clavulariidae_g2235UNCHARACTERIZED
Clavulariidae_g22350
Clavulariidae_g22351
Clavulariidae_g22352
Clavulariidae_g22353REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22354REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22355PROTEIN B, PUTATIVE-RELATED-RELATED
Clavulariidae_g22356SENTRIN/SUMO-SPECIFIC PROTEASE
Clavulariidae_g22357PENTRAXIN
Clavulariidae_g22358PROTEIN B, PUTATIVE-RELATED-RELATED
Clavulariidae_g22359PROTEIN CBG26694
Clavulariidae_g2236
Clavulariidae_g22360PROTEIN CBG26694
Clavulariidae_g22361TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g22362REVERSE TRANSCRIPTASE
Clavulariidae_g22363SNAC DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22364TRANSPOSABLE ELEMENT TC3 TRANSPOSASE-LIKE PROTEIN
Clavulariidae_g22365
Clavulariidae_g22366
Clavulariidae_g22367TMEM26 PROTEIN
Clavulariidae_g22368
Clavulariidae_g22369RING FINGER PROTEIN 17
Clavulariidae_g2237DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22370DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER
Clavulariidae_g22371NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12
Clavulariidae_g22372NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12
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