About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g22193
Clavulariidae_g22194DNA2/NAM7 HELICASE FAMILY
Clavulariidae_g22195
Clavulariidae_g22196ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22197
Clavulariidae_g22198
Clavulariidae_g22199
Clavulariidae_g222DNA2/NAM7 HELICASE FAMILY
Clavulariidae_g2220OS07G0190500 PROTEIN
Clavulariidae_g22200THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g22201
Clavulariidae_g22202PROTEIN CBG26694
Clavulariidae_g22203DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g22204PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22205TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)
Clavulariidae_g22206TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)
Clavulariidae_g22207
Clavulariidae_g22208
Clavulariidae_g22209TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)
Clavulariidae_g2221FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Clavulariidae_g22210GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 2
Clavulariidae_g22211NON-SPECIFIC LETHAL 1, ISOFORM M
Clavulariidae_g22212
Clavulariidae_g22213UDP-GLUCOSE 4-EPIMERASE
Clavulariidae_g22214
Clavulariidae_g22215COLLAGEN ALPHA
Clavulariidae_g22216DNA-BINDING PROTEIN-RELATED-RELATED
Clavulariidae_g22217DNA POLYMERASE
Clavulariidae_g22218PROTEIN ZERKNUELLT 1-RELATED
Clavulariidae_g22219HOMEOBOX PROTEIN HOX
Clavulariidae_g2222FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Clavulariidae_g22220PROTEIN ZERKNUELLT 1-RELATED
Clavulariidae_g22221RHO FAMILY GTPASE
Clavulariidae_g22222LIPID PHOSPHATE PHOSPHATASE
Clavulariidae_g22223REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22224
Clavulariidae_g22225
Clavulariidae_g22226
Clavulariidae_g22227
Clavulariidae_g22228THAP DOMAIN PROTEIN
Clavulariidae_g22229ATP-DEPENDENT DNA HELICASE
Clavulariidae_g2223ORGANIC ANION TRANSPORTER
Clavulariidae_g22230STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 2
Clavulariidae_g22231NADH-UBIQUINONE OXIDOREDUCTASE SUBUNIT
Clavulariidae_g22232
Clavulariidae_g22233
Clavulariidae_g22234EXPRESSED PROTEIN
Clavulariidae_g22235
Clavulariidae_g22236UNCHARACTERIZED
Clavulariidae_g22237REVERSE TRANSCRIPTASES
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