Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g22193 | |
Clavulariidae_g22194 | DNA2/NAM7 HELICASE FAMILY |
Clavulariidae_g22195 | |
Clavulariidae_g22196 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g22197 | |
Clavulariidae_g22198 | |
Clavulariidae_g22199 | |
Clavulariidae_g222 | DNA2/NAM7 HELICASE FAMILY |
Clavulariidae_g2220 | OS07G0190500 PROTEIN |
Clavulariidae_g22200 | THAP DOMAIN-CONTAINING PROTEIN 6 |
Clavulariidae_g22201 | |
Clavulariidae_g22202 | PROTEIN CBG26694 |
Clavulariidae_g22203 | DNA HELICASE RECQ FAMILY MEMBER |
Clavulariidae_g22204 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g22205 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) |
Clavulariidae_g22206 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) |
Clavulariidae_g22207 | |
Clavulariidae_g22208 | |
Clavulariidae_g22209 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) |
Clavulariidae_g2221 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
Clavulariidae_g22210 | GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 2 |
Clavulariidae_g22211 | NON-SPECIFIC LETHAL 1, ISOFORM M |
Clavulariidae_g22212 | |
Clavulariidae_g22213 | UDP-GLUCOSE 4-EPIMERASE |
Clavulariidae_g22214 | |
Clavulariidae_g22215 | COLLAGEN ALPHA |
Clavulariidae_g22216 | DNA-BINDING PROTEIN-RELATED-RELATED |
Clavulariidae_g22217 | DNA POLYMERASE |
Clavulariidae_g22218 | PROTEIN ZERKNUELLT 1-RELATED |
Clavulariidae_g22219 | HOMEOBOX PROTEIN HOX |
Clavulariidae_g2222 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
Clavulariidae_g22220 | PROTEIN ZERKNUELLT 1-RELATED |
Clavulariidae_g22221 | RHO FAMILY GTPASE |
Clavulariidae_g22222 | LIPID PHOSPHATE PHOSPHATASE |
Clavulariidae_g22223 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g22224 | |
Clavulariidae_g22225 | |
Clavulariidae_g22226 | |
Clavulariidae_g22227 | |
Clavulariidae_g22228 | THAP DOMAIN PROTEIN |
Clavulariidae_g22229 | ATP-DEPENDENT DNA HELICASE |
Clavulariidae_g2223 | ORGANIC ANION TRANSPORTER |
Clavulariidae_g22230 | STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 2 |
Clavulariidae_g22231 | NADH-UBIQUINONE OXIDOREDUCTASE SUBUNIT |
Clavulariidae_g22232 | |
Clavulariidae_g22233 | |
Clavulariidae_g22234 | EXPRESSED PROTEIN |
Clavulariidae_g22235 | |
Clavulariidae_g22236 | UNCHARACTERIZED |
Clavulariidae_g22237 | REVERSE TRANSCRIPTASES |