About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g22238
Clavulariidae_g22239
Clavulariidae_g2224PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22240G PROTEIN-COUPLED RECEPTOR-RELATED
Clavulariidae_g22241G PROTEIN-COUPLED RECEPTOR-RELATED
Clavulariidae_g22242I[[H]] CHANNEL, ISOFORM E
Clavulariidae_g22243G PROTEIN-COUPLED RECEPTOR-RELATED
Clavulariidae_g22244REVERSE TRANSCRIPTASES
Clavulariidae_g22245I[[H]] CHANNEL, ISOFORM E
Clavulariidae_g22246
Clavulariidae_g22247I[[H]] CHANNEL, ISOFORM E
Clavulariidae_g22248RESPIRATORY NITRATE REDUCTASE
Clavulariidae_g22249RIBOSOMAL PROTEIN L2
Clavulariidae_g2225RETROTRANSPOSON
Clavulariidae_g22250UNCHARACTERIZED
Clavulariidae_g22251UNCHARACTERIZED PROTEIN C17ORF53 HOMOLOG
Clavulariidae_g22252
Clavulariidae_g22253
Clavulariidae_g22254SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g22255ZGC:195170
Clavulariidae_g22256ENZYMATIC POLYPROTEIN-RELATED
Clavulariidae_g22257CHONDROITIN SYNTHASE
Clavulariidae_g22258UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE
Clavulariidae_g22259ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g2226PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22260
Clavulariidae_g22261
Clavulariidae_g22262
Clavulariidae_g22263
Clavulariidae_g22264
Clavulariidae_g22265
Clavulariidae_g22266
Clavulariidae_g22267COLLAGEN ALPHA
Clavulariidae_g22268EXPRESSED PROTEIN
Clavulariidae_g22269
Clavulariidae_g2227
Clavulariidae_g22270EXPRESSED PROTEIN
Clavulariidae_g22271PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22272INTELECTIN
Clavulariidae_g22273PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22274RETROTRANSPOSON
Clavulariidae_g22275PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22276AGAP003327-PA
Clavulariidae_g22277
Clavulariidae_g22278
Clavulariidae_g22279
Clavulariidae_g2228PROTEIN CBG26694
Clavulariidae_g22280ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22281ATP-DEPENDENT DNA HELICASE
Clavulariidae_g22282
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