Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ～1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
| Gene ID | Description |
|---|---|
| Clavulariidae_g22373 | |
| Clavulariidae_g22374 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
| Clavulariidae_g22375 | NACHT, LRR AND CARD DOMAINS-CONTAINING |
| Clavulariidae_g22376 | NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12 |
| Clavulariidae_g22377 | NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12 |
| Clavulariidae_g22378 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
| Clavulariidae_g22379 | |
| Clavulariidae_g2238 | RING-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g22380 | KELCH PROTEIN |
| Clavulariidae_g22381 | KELCH PROTEIN |
| Clavulariidae_g22382 | |
| Clavulariidae_g22383 | |
| Clavulariidae_g22384 | PROTEASOME ASSEMBLY CHAPERONE 2 |
| Clavulariidae_g22385 | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE |
| Clavulariidae_g22386 | CYSTEINE-RICH SECRETORY PROTEIN-RELATED |
| Clavulariidae_g22387 | DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE |
| Clavulariidae_g22388 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| Clavulariidae_g22389 | TRANSPOSON |
| Clavulariidae_g2239 | RING-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g22390 | |
| Clavulariidae_g22391 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS |
| Clavulariidae_g22392 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS |
| Clavulariidae_g22393 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g22394 | REVERSE TRANSCRIPTASES |
| Clavulariidae_g22395 | |
| Clavulariidae_g22396 | PROTEIN CBG26694 |
| Clavulariidae_g22397 | PHOSPHORYLASE B KINASE REGULATORY SUBUNIT |
| Clavulariidae_g22398 | |
| Clavulariidae_g22399 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g224 | |
| Clavulariidae_g2240 | GAMMA GLUTAMYL TRANSPEPTIDASE |
| Clavulariidae_g22400 | |
| Clavulariidae_g22401 | |
| Clavulariidae_g22402 | |
| Clavulariidae_g22403 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g22404 | |
| Clavulariidae_g22405 | |
| Clavulariidae_g22406 | |
| Clavulariidae_g22407 | PROTEIN CBG26694 |
| Clavulariidae_g22408 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g22409 | DLEC1 DELETED IN LUNG AND ESOPHAGEAL CANCER 1 |
| Clavulariidae_g2241 | |
| Clavulariidae_g22410 | DLEC1 DELETED IN LUNG AND ESOPHAGEAL CANCER 1 |
| Clavulariidae_g22411 | REPLICATION PROTEIN A-RELATED |
| Clavulariidae_g22412 | E3 UBIQUITIN-PROTEIN LIGASE TRIM |
| Clavulariidae_g22413 | |
| Clavulariidae_g22414 | KINESIN LIGHT CHAIN |
| Clavulariidae_g22415 | |
| Clavulariidae_g22416 | |
| Clavulariidae_g22417 | DNA-BINDING PROTEIN-RELATED-RELATED |
