About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g22508
Clavulariidae_g22509ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g2251CENTROMERE PROTEIN Q
Clavulariidae_g22510SOLUTE CARRIER FAMILY 39
Clavulariidae_g22511TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g22512
Clavulariidae_g22513PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22514RETROTRANSPOSON
Clavulariidae_g22515RETROTRANSPOSON
Clavulariidae_g22516RETROTRANSPOSON
Clavulariidae_g22517RETROTRANSPOSON
Clavulariidae_g22518CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED
Clavulariidae_g22519UNCHARACTERIZED
Clavulariidae_g2252
Clavulariidae_g22520GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE
Clavulariidae_g22521ABC TRANSPORTER G FAMILY MEMBER 28
Clavulariidae_g22522ANION EXCHANGE PROTEIN
Clavulariidae_g22523ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22524INNER MEMBRANE TRANSPORT PROTEIN YAJR
Clavulariidae_g22525CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g22526
Clavulariidae_g22527REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22528PROTEIN CBG26694
Clavulariidae_g22529ATP-BINDING CASSETTE SUB-FAMILY C
Clavulariidae_g2253U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A
Clavulariidae_g22530SIMILAR TO RIKEN CDNA E130308A19
Clavulariidae_g22531
Clavulariidae_g22532DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22533
Clavulariidae_g22534
Clavulariidae_g22535MISSHAPEN LIKE KINASE 1
Clavulariidae_g22536REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT
Clavulariidae_g22537UBIQUITIN-LIKE-CONJUGATING ENZYME ATG3
Clavulariidae_g22538TRANSCRIPTIONAL ACTIVATOR CUBITUS INTERRUPTUS
Clavulariidae_g22539
Clavulariidae_g2254POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1
Clavulariidae_g22540
Clavulariidae_g22541DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
Clavulariidae_g22542
Clavulariidae_g22543
Clavulariidae_g22544
Clavulariidae_g22545GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2
Clavulariidae_g22546GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2
Clavulariidae_g22547CYSTEINE DESULFURASE
Clavulariidae_g22548
Clavulariidae_g22549ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g2255UNCHARACTERIZED
Clavulariidae_g22550ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22551
Clavulariidae_g22552METABOTROPIC GLUTAMATE RECEPTOR
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