About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g22553
Clavulariidae_g22554GUANYL-NUCLEOTIDE EXCHANGE FACTOR
Clavulariidae_g22555
Clavulariidae_g22556
Clavulariidae_g22557
Clavulariidae_g22558
Clavulariidae_g22559SYNAPSIN
Clavulariidae_g2256UNCHARACTERIZED
Clavulariidae_g22560ENZYMATIC POLYPROTEIN-RELATED
Clavulariidae_g22561
Clavulariidae_g22562AMMONIUM TRANSPORTER
Clavulariidae_g22563POL PROTEIN
Clavulariidae_g22564
Clavulariidae_g22565
Clavulariidae_g22566ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22567SURFACE ANTIGEN BSPA-LIKE-RELATED
Clavulariidae_g22568SOLUTE CARRIER FAMILY 34 SODIUM PHOSPHATE , MEMBER 2-RELATED
Clavulariidae_g22569HISTONE H2A
Clavulariidae_g2257LIPOXYGENASE
Clavulariidae_g22570ORIGIN RECOGNITION COMPLEX SUBUNIT 3
Clavulariidae_g22571ATP-DEPENDENT RNA HELICASE DBP3
Clavulariidae_g22572
Clavulariidae_g22573TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g22574TRANSPOSON
Clavulariidae_g22575INTERLEUKIN-1 RECEPTOR FAMILY MEMBER
Clavulariidae_g22576CONTACTIN 5
Clavulariidae_g22577
Clavulariidae_g22578SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g22579
Clavulariidae_g2258PROTEIN CBG26694
Clavulariidae_g22580
Clavulariidae_g22581TRANSIENT RECEPTOR POTENTIAL CHANNEL
Clavulariidae_g22582PROTEIN CBG26694
Clavulariidae_g22583
Clavulariidae_g22584REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22585ENDONUCLEASE-RELATED
Clavulariidae_g22586TRANSIENT RECEPTOR POTENTIAL CHANNEL
Clavulariidae_g22587SHORT CHAIN DEHYDROGENASE
Clavulariidae_g22588
Clavulariidae_g22589RETINOL DEHYDROGENASE-RELATED
Clavulariidae_g2259REVERSE TRANSCRIPTASES
Clavulariidae_g22590
Clavulariidae_g22591EUKARYOTIC ELONGATION FACTOR 2 KINASE-RELATED
Clavulariidae_g22592INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22593RETROTRANSPOSON
Clavulariidae_g22594ZINC FINGER PROTEIN
Clavulariidae_g22595REVERSE TRANSCRIPTASES
Clavulariidae_g22596SGNH_HYDRO DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22597
Clavulariidae_g22598EXPRESSED PROTEIN
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