About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g22689SIMILAR TO RIKEN CDNA E130308A19
Clavulariidae_g2269
Clavulariidae_g22690
Clavulariidae_g22691RETROTRANSPOSON
Clavulariidae_g22692PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22693BONUS, ISOFORM C-RELATED
Clavulariidae_g22694
Clavulariidae_g22695BONUS, ISOFORM C-RELATED
Clavulariidae_g22696RETROTRANSPOSON
Clavulariidae_g22697RETROTRANSPOSON
Clavulariidae_g22698EXPRESSED PROTEIN
Clavulariidae_g22699
Clavulariidae_g227
Clavulariidae_g2270
Clavulariidae_g22700PROTEIN VAV
Clavulariidae_g22701REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22702REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22703
Clavulariidae_g22704
Clavulariidae_g22705
Clavulariidae_g22706PROTEIN CBG23764
Clavulariidae_g22707ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22708DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g22709-
Clavulariidae_g2271
Clavulariidae_g22710EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22711THAP DOMAIN PROTEIN
Clavulariidae_g22712COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
Clavulariidae_g22713REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22714RHO GTPASE-ACTIVATING PROTEIN 100F
Clavulariidae_g22715
Clavulariidae_g22716ARYLSULFATASE
Clavulariidae_g22717
Clavulariidae_g22718PROTEIN CBG26694
Clavulariidae_g22719RETROTRANSPOSON
Clavulariidae_g2272
Clavulariidae_g22720EUKARYOTIC ELONGATION FACTOR 2 KINASE-RELATED
Clavulariidae_g22721EXPRESSED PROTEIN
Clavulariidae_g22722
Clavulariidae_g22723REVERSE TRANSCRIPTASE
Clavulariidae_g22724
Clavulariidae_g22725REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22726POLY A POLYMERASE
Clavulariidae_g22727
Clavulariidae_g22728HMG DOMAIN-CONTAINING PROTEIN 3
Clavulariidae_g22729UNCHARACTERIZED
Clavulariidae_g2273
Clavulariidae_g22730RETROTRANSPOSON
Clavulariidae_g22731ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22732ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
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