Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ～1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
| Gene ID | Description |
|---|---|
| Clavulariidae_g22779 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g2278 | |
| Clavulariidae_g22780 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g22781 | |
| Clavulariidae_g22782 | EXPRESSED PROTEIN |
| Clavulariidae_g22783 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| Clavulariidae_g22784 | - |
| Clavulariidae_g22785 | DUF3504 DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g22786 | DUF3504 DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g22787 | |
| Clavulariidae_g22788 | |
| Clavulariidae_g22789 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g2279 | GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
| Clavulariidae_g22790 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g22791 | REVERSE TRANSCRIPTASES |
| Clavulariidae_g22792 | EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED |
| Clavulariidae_g22793 | |
| Clavulariidae_g22794 | |
| Clavulariidae_g22795 | |
| Clavulariidae_g22796 | DNA POLYMERASE |
| Clavulariidae_g22797 | |
| Clavulariidae_g22798 | INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g22799 | |
| Clavulariidae_g228 | F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED |
| Clavulariidae_g2280 | WD REPEAT DOMAIN-CONTAINING FAMILY |
| Clavulariidae_g22800 | |
| Clavulariidae_g22801 | |
| Clavulariidae_g22802 | INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g22803 | UNCHARACTERIZED |
| Clavulariidae_g22804 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g22805 | |
| Clavulariidae_g22806 | VOLTAGE-DEPENDENT CALCIUM CHANNEL BETA SUBUNIT |
| Clavulariidae_g22807 | |
| Clavulariidae_g22808 | EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED |
| Clavulariidae_g22809 | NACHT, LRR AND CARD DOMAINS-CONTAINING |
| Clavulariidae_g2281 | DRAB11-RELATED |
| Clavulariidae_g22810 | |
| Clavulariidae_g22811 | |
| Clavulariidae_g22812 | |
| Clavulariidae_g22813 | EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED |
| Clavulariidae_g22814 | PROTEIN CBG26694 |
| Clavulariidae_g22815 | |
| Clavulariidae_g22816 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
| Clavulariidae_g22817 | REVERSE TRANSCRIPTASES |
| Clavulariidae_g22818 | REGULATORY PROTEIN ZESTE |
| Clavulariidae_g22819 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g2282 | PROTEIN SON |
| Clavulariidae_g22820 | |
| Clavulariidae_g22821 | COLLAGEN ALPHA |
| Clavulariidae_g22822 |
