About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g22869UNCHARACTERIZED
Clavulariidae_g2287TIAM (MAMMALIAN TUMOR INVASION AND METASTASIS FACTOR) HOMOLOG
Clavulariidae_g22870UNCHARACTERIZED
Clavulariidae_g22871DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE-RELATED
Clavulariidae_g22872CYTOSOLIC PHOSPHOLIPASE A2
Clavulariidae_g22873EXPRESSED PROTEIN
Clavulariidae_g22874RETROTRANSPOSON
Clavulariidae_g22875PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22876STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE
Clavulariidae_g22877STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE
Clavulariidae_g22878STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE
Clavulariidae_g22879TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN
Clavulariidae_g2288UNCHARACTERIZED
Clavulariidae_g22880ARGINYL-TRNA SYNTHETASE
Clavulariidae_g22881RUVB-RELATED REPTIN AND PONTIN
Clavulariidae_g22882-
Clavulariidae_g22883N-HYDROXYARYLAMINE O-ACETYLTRANSFERASE
Clavulariidae_g22884INVERTED FORMIN-2
Clavulariidae_g22885
Clavulariidae_g22886
Clavulariidae_g22887CRAMPED PROTEIN
Clavulariidae_g22888THIOREDOXIN DOMAIN-CONTAINING PROTEIN 9
Clavulariidae_g22889PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED
Clavulariidae_g2289INTERLEUKIN-1 RECEPTOR-ASSOCIATED KINASE 1-BINDING PROTEIN 1
Clavulariidae_g22890IP01015P-RELATED
Clavulariidae_g22891THAP DOMAIN PROTEIN
Clavulariidae_g22892EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22893ZINC FINGER AND BTB DOMAIN-CONTAINING
Clavulariidae_g22894UNCHARACTERIZED
Clavulariidae_g22895GLYCOSYL TRANSFERASE
Clavulariidae_g22896SMAD
Clavulariidae_g22897ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22898TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED
Clavulariidae_g22899EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN
Clavulariidae_g229
Clavulariidae_g2290CALCIPRESSIN
Clavulariidae_g22900TRANSCRIPTION FACTOR SPT20 HOMOLOG
Clavulariidae_g22901ANKYRIN REPEAT CONTAINING
Clavulariidae_g22902ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22903RETROTRANSPOSON
Clavulariidae_g22904TOUCAN, ISOFORM A
Clavulariidae_g22905REVERSE TRANSCRIPTASES
Clavulariidae_g22906REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22907
Clavulariidae_g22908
Clavulariidae_g22909
Clavulariidae_g2291TIAM (MAMMALIAN TUMOR INVASION AND METASTASIS FACTOR) HOMOLOG
Clavulariidae_g22910DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g22911METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE
Clavulariidae_g22912REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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