About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g22959REVERSE TRANSCRIPTASE
Clavulariidae_g2296AMMONIUM TRANSPORTER
Clavulariidae_g22960
Clavulariidae_g22961
Clavulariidae_g22962LEUCOKININ RECEPTOR-RELATED
Clavulariidae_g22963REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22964RETROTRANSPOSON
Clavulariidae_g22965G-PROTEIN COUPLED RECEPTOR
Clavulariidae_g22966NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
Clavulariidae_g22967TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Clavulariidae_g22968SERINE/THREONINE-PROTEIN KINASE PLK
Clavulariidae_g22969PROTEIN INTURNED
Clavulariidae_g2297
Clavulariidae_g22970ALDEHYDE DEHYDROGENASE
Clavulariidae_g22971SCHLAFEN
Clavulariidae_g22972PAIRED BOX PROTEIN PAX-6-RELATED-RELATED
Clavulariidae_g22973
Clavulariidae_g22974RETROTRANSPOSON
Clavulariidae_g22975
Clavulariidae_g22976RETROTRANSPOSON
Clavulariidae_g22977
Clavulariidae_g22978
Clavulariidae_g22979PENICILLIN-BINDING PROTEIN
Clavulariidae_g2298
Clavulariidae_g22980INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g22981
Clavulariidae_g22982
Clavulariidae_g22983FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Clavulariidae_g22984
Clavulariidae_g22985BETA-GLUCURONIDASE
Clavulariidae_g22986BETA-GLUCURONIDASE
Clavulariidae_g22987
Clavulariidae_g22988HSDA/SDA1-RELATED
Clavulariidae_g22989RETROTRANSPOSON
Clavulariidae_g2299UNCHARACTERIZED
Clavulariidae_g22990PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE
Clavulariidae_g22991HISTONE H1
Clavulariidae_g22992
Clavulariidae_g22993
Clavulariidae_g22994REVERSE TRANSCRIPTASES
Clavulariidae_g22995SERINE/THREONINE-PROTEIN KINASE ATM
Clavulariidae_g22996PROTEIN CBG26694
Clavulariidae_g22997LAR INTERACTING PROTEIN LIP -RELATED PROTEIN
Clavulariidae_g22998
Clavulariidae_g22999
Clavulariidae_g23LUPUS LA PROTEIN-RELATED
Clavulariidae_g230
Clavulariidae_g2300KINESIN-LIKE PROTEIN KLP-3
Clavulariidae_g23000ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23001ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
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