Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ～1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
| Gene ID | Description |
|---|---|
| Clavulariidae_g23002 | FAM11A, B PROTEIN |
| Clavulariidae_g23003 | ANKYRIN REPEAT FAMILY PROTEIN |
| Clavulariidae_g23004 | RNA 2',3'-CYCLIC PHOSPHODIESTERASE |
| Clavulariidae_g23005 | UFM1-SPECIFIC PROTEASE 2 |
| Clavulariidae_g23006 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
| Clavulariidae_g23007 | PROTEIN DIAPHANOUS |
| Clavulariidae_g23008 | GRB2-ASSOCIATED-BINDING PROTEIN |
| Clavulariidae_g23009 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g2301 | TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II |
| Clavulariidae_g23010 | PROTEIN CBG26694 |
| Clavulariidae_g23011 | TRANSCRIPTION INITIATION FACTOR TFIID 55 KD SUBUNIT-RELATED |
| Clavulariidae_g23012 | ION_TRANS DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g23013 | |
| Clavulariidae_g23014 | CYTOCHROME P450 FAMILY 46 SUBFAMILY A |
| Clavulariidae_g23015 | RIBOSOMAL RNA METHYLTRANSFERASE |
| Clavulariidae_g23016 | |
| Clavulariidae_g23017 | WD40 REPEAT PROTEIN |
| Clavulariidae_g23018 | |
| Clavulariidae_g23019 | |
| Clavulariidae_g2302 | LANC-LIKE PROTEIN |
| Clavulariidae_g23020 | |
| Clavulariidae_g23021 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g23022 | |
| Clavulariidae_g23023 | PHOSPHOGLYCERATE KINASE |
| Clavulariidae_g23024 | HEAT SHOCK PROTEIN 90 FAMILY MEMBER |
| Clavulariidae_g23025 | TRANSCRIPTIONAL ACTIVATOR CUBITUS INTERRUPTUS |
| Clavulariidae_g23026 | CYTOPLASMIC FMR1-INTERACTING PROTEIN-RELATED |
| Clavulariidae_g23027 | FE2OG DIOXYGENASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g23028 | |
| Clavulariidae_g23029 | IP13529P |
| Clavulariidae_g2303 | ZINC FINGER, RING/FYVE/PHD-TYPE |
| Clavulariidae_g23030 | SI:CH211-196P9.1-RELATED |
| Clavulariidae_g23031 | |
| Clavulariidae_g23032 | BETA TRANSDUCIN-RELATED PROTEIN |
| Clavulariidae_g23033 | - |
| Clavulariidae_g23034 | |
| Clavulariidae_g23035 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
| Clavulariidae_g23036 | |
| Clavulariidae_g23037 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
| Clavulariidae_g23038 | - |
| Clavulariidae_g23039 | |
| Clavulariidae_g2304 | WD40 REPEAT FAMILY |
| Clavulariidae_g23040 | TYROSINE-PROTEIN KINASE |
| Clavulariidae_g23041 | |
| Clavulariidae_g23042 | ARFAPTIN-RELATED |
| Clavulariidae_g23043 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
| Clavulariidae_g23044 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
| Clavulariidae_g23045 | OVOCHYMASE-RELATED |
| Clavulariidae_g23046 | REVERSE TRANSCRIPTASES |
| Clavulariidae_g23047 |
