About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g23138HISTIDINE TRIAD HIT PROTEIN MEMBER
Clavulariidae_g23139TRANSLATION INITIATION FACTOR IF-2-RELATED
Clavulariidae_g2314DNAJ HOMOLOG SUBFAMILY C MEMBER
Clavulariidae_g23140RETROTRANSPOSON
Clavulariidae_g23141PROTEIN REGULATOR OF CYTOKINESIS 1 PRC1-RELATED
Clavulariidae_g23142SERINE-THREONINE PROTEIN KINASE
Clavulariidae_g23143SMR DOMAIN-CONTAINING PROTEIN YPL199C
Clavulariidae_g23144STEROID RECEPTOR RNA ACTIVATOR 1
Clavulariidae_g23145STROMAL INTERACTION MOLECULE HOMOLOG
Clavulariidae_g23146COMPLEMENT COMPONENT C6
Clavulariidae_g23147RAN GTPASE-ACTIVATING PROTEIN 1
Clavulariidae_g23148AMINOPEPTIDASE O
Clavulariidae_g23149PUTATIVE-RELATED
Clavulariidae_g2315FLAVIN MONOAMINE OXIDASE
Clavulariidae_g23150
Clavulariidae_g23151
Clavulariidae_g23152
Clavulariidae_g23153
Clavulariidae_g23154
Clavulariidae_g23155
Clavulariidae_g23156ZINC FINGER MYND DOMAIN CONTAINING PROTEIN 10
Clavulariidae_g23157RETROTRANSPOSON
Clavulariidae_g23158
Clavulariidae_g23159HIGH MOBILITY GROUP B PROTEIN 4-RELATED
Clavulariidae_g2316TRANSMEMBRANE PROTEIN 181
Clavulariidae_g23160TRANSCRIPTIONAL REGULATOR
Clavulariidae_g23161PRENYLTRANSFERASES
Clavulariidae_g23162PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23163CAPZ-INTERACTING PROTEIN AND RELATED PROTEINS
Clavulariidae_g23164-
Clavulariidae_g23165
Clavulariidae_g23166
Clavulariidae_g23167
Clavulariidae_g23168
Clavulariidae_g23169INTERFERON REGULATORY FACTOR
Clavulariidae_g2317PENTRAXIN
Clavulariidae_g23170INTERFERON REGULATORY FACTOR
Clavulariidae_g23171RP42 RELATED
Clavulariidae_g23172ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED
Clavulariidae_g23173SCHLAFEN
Clavulariidae_g23174
Clavulariidae_g23175REVERSE TRANSCRIPTASES
Clavulariidae_g23176ARRESTIN DOMAIN CONTAINING PROTEIN
Clavulariidae_g23177
Clavulariidae_g23178PROTEIN CBG26694
Clavulariidae_g23179PROTEIN CBG26694
Clavulariidae_g2318TNFAIP3-INTERACTING PROTEIN COILED COIL FAMILY MEMBER
Clavulariidae_g23180
Clavulariidae_g23181PHEROMONE SHUTDOWN PROTEIN
Clavulariidae_g23182PHYTANOYL-COA ALPHA-HYDROXYLASE
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