Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g23138 | HISTIDINE TRIAD HIT PROTEIN MEMBER |
Clavulariidae_g23139 | TRANSLATION INITIATION FACTOR IF-2-RELATED |
Clavulariidae_g2314 | DNAJ HOMOLOG SUBFAMILY C MEMBER |
Clavulariidae_g23140 | RETROTRANSPOSON |
Clavulariidae_g23141 | PROTEIN REGULATOR OF CYTOKINESIS 1 PRC1-RELATED |
Clavulariidae_g23142 | SERINE-THREONINE PROTEIN KINASE |
Clavulariidae_g23143 | SMR DOMAIN-CONTAINING PROTEIN YPL199C |
Clavulariidae_g23144 | STEROID RECEPTOR RNA ACTIVATOR 1 |
Clavulariidae_g23145 | STROMAL INTERACTION MOLECULE HOMOLOG |
Clavulariidae_g23146 | COMPLEMENT COMPONENT C6 |
Clavulariidae_g23147 | RAN GTPASE-ACTIVATING PROTEIN 1 |
Clavulariidae_g23148 | AMINOPEPTIDASE O |
Clavulariidae_g23149 | PUTATIVE-RELATED |
Clavulariidae_g2315 | FLAVIN MONOAMINE OXIDASE |
Clavulariidae_g23150 | |
Clavulariidae_g23151 | |
Clavulariidae_g23152 | |
Clavulariidae_g23153 | |
Clavulariidae_g23154 | |
Clavulariidae_g23155 | |
Clavulariidae_g23156 | ZINC FINGER MYND DOMAIN CONTAINING PROTEIN 10 |
Clavulariidae_g23157 | RETROTRANSPOSON |
Clavulariidae_g23158 | |
Clavulariidae_g23159 | HIGH MOBILITY GROUP B PROTEIN 4-RELATED |
Clavulariidae_g2316 | TRANSMEMBRANE PROTEIN 181 |
Clavulariidae_g23160 | TRANSCRIPTIONAL REGULATOR |
Clavulariidae_g23161 | PRENYLTRANSFERASES |
Clavulariidae_g23162 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g23163 | CAPZ-INTERACTING PROTEIN AND RELATED PROTEINS |
Clavulariidae_g23164 | - |
Clavulariidae_g23165 | |
Clavulariidae_g23166 | |
Clavulariidae_g23167 | |
Clavulariidae_g23168 | |
Clavulariidae_g23169 | INTERFERON REGULATORY FACTOR |
Clavulariidae_g2317 | PENTRAXIN |
Clavulariidae_g23170 | INTERFERON REGULATORY FACTOR |
Clavulariidae_g23171 | RP42 RELATED |
Clavulariidae_g23172 | ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED |
Clavulariidae_g23173 | SCHLAFEN |
Clavulariidae_g23174 | |
Clavulariidae_g23175 | REVERSE TRANSCRIPTASES |
Clavulariidae_g23176 | ARRESTIN DOMAIN CONTAINING PROTEIN |
Clavulariidae_g23177 | |
Clavulariidae_g23178 | PROTEIN CBG26694 |
Clavulariidae_g23179 | PROTEIN CBG26694 |
Clavulariidae_g2318 | TNFAIP3-INTERACTING PROTEIN COILED COIL FAMILY MEMBER |
Clavulariidae_g23180 | |
Clavulariidae_g23181 | PHEROMONE SHUTDOWN PROTEIN |
Clavulariidae_g23182 | PHYTANOYL-COA ALPHA-HYDROXYLASE |