About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g23228KERATIN, ULTRA HIGH-SULFUR MATRIX PROTEIN-LIKE
Clavulariidae_g23229PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g2323MULTICOPPER OXIDASE-RELATED
Clavulariidae_g23230DYSTROGLYCAN-RELATED
Clavulariidae_g23231PLECKSTRIN
Clavulariidae_g23232DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED
Clavulariidae_g23233RETROTRANSPOSON
Clavulariidae_g23234HOST CELL FACTOR
Clavulariidae_g23235D123 PROTEIN
Clavulariidae_g23236
Clavulariidae_g23237
Clavulariidae_g23238PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23239RETROTRANSPOSON
Clavulariidae_g2324SOX TRANSCRIPTION FACTOR
Clavulariidae_g23240RETROTRANSPOSON
Clavulariidae_g23241PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23242PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23243
Clavulariidae_g23244
Clavulariidae_g23245RETROTRANSPOSON
Clavulariidae_g23246PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23247HSC70CB, ISOFORM G-RELATED
Clavulariidae_g23248REVERSE TRANSCRIPTASES
Clavulariidae_g23249WD-REPEAT PROTEIN-RELATED
Clavulariidae_g2325
Clavulariidae_g23250RETROTRANSPOSON
Clavulariidae_g23251THAP DOMAIN PROTEIN
Clavulariidae_g23252EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23253
Clavulariidae_g23254THAP DOMAIN PROTEIN
Clavulariidae_g23255EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23256RETROTRANSPOSON
Clavulariidae_g23257PROTEIN B, PUTATIVE-RELATED-RELATED
Clavulariidae_g23258G DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23259RETROTRANSPOSON
Clavulariidae_g2326TEKTIN
Clavulariidae_g23260
Clavulariidae_g23261
Clavulariidae_g23262
Clavulariidae_g23263COLLAGEN ALPHA
Clavulariidae_g23264
Clavulariidae_g23265PROTEIN CBG23764
Clavulariidae_g23266PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23267THAP DOMAIN PROTEIN
Clavulariidae_g23268EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23269AIG1-TYPE G DOMAIN-CONTAINING PROTEIN
Clavulariidae_g2327TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS
Clavulariidae_g23270G DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23271PROTEIN CBG26694
Clavulariidae_g23272PROTEIN CBG26694
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