About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g23273TRANSMEMBRANE PROTEIN KIAA1109
Clavulariidae_g23274PROLYL 4-HYDROXYLASE ALPHA SUBUNIT
Clavulariidae_g23275HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
Clavulariidae_g23276GDP-MAN:MAN(3)GLCNAC(2)-PP-DOL ALPHA-1,2-MANNOSYLTRANSFERASE
Clavulariidae_g23277BREAST CANCER TYPE 2 SUSCEPTIBILITY PROTEIN BRCA2
Clavulariidae_g23278UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX ASSEMBLY FACTOR 1 FAMILY MEMBER
Clavulariidae_g23279
Clavulariidae_g2328GCIP-INTERACTING PROTEIN P29
Clavulariidae_g23280
Clavulariidae_g23281-
Clavulariidae_g23282NEUROTRANSMITTER GATED ION CHANNEL
Clavulariidae_g23283PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE
Clavulariidae_g23284TYROSINE-PROTEIN KINASE RECEPTOR
Clavulariidae_g23285DACHSHUND
Clavulariidae_g23286TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN
Clavulariidae_g23287TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN
Clavulariidae_g23288TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN
Clavulariidae_g23289TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN
Clavulariidae_g2329UNCONVENTIONAL MYOSIN-IXB-LIKE PROTEIN
Clavulariidae_g23290THAP DOMAIN PROTEIN
Clavulariidae_g23291COILED-COIL DOMAIN-CONTAINING PROTEIN 138
Clavulariidae_g23292DESMOGLEIN FAMILY MEMBER
Clavulariidae_g23293CADHERIN-23
Clavulariidae_g23294WD REPEAT-CONTAINING PROTEIN 17
Clavulariidae_g23295
Clavulariidae_g23296
Clavulariidae_g23297PHENYLALANYL-TRNA SYNTHETASE
Clavulariidae_g23298PROTEIN CBG26694
Clavulariidae_g23299REVERSE TRANSCRIPTASES
Clavulariidae_g233PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g2330ACETYL-COA C-ACYLTRANSFERASE
Clavulariidae_g23300ATP-DEPENDENT (S)-NAD(P)H-HYDRATE DEHYDRATASE FAMILY MEMBER
Clavulariidae_g23301ZINC FINGER PROTEIN
Clavulariidae_g23302RETROTRANSPOSON
Clavulariidae_g23303PROTEIN CBG26694
Clavulariidae_g23304PROTEIN CBG26694
Clavulariidae_g23305
Clavulariidae_g23306
Clavulariidae_g23307ANK_REP_REGION DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23308INTELECTIN
Clavulariidae_g23309
Clavulariidae_g2331CTP SYNTHASE
Clavulariidae_g23310
Clavulariidae_g23311
Clavulariidae_g23312
Clavulariidae_g23313RETROTRANSPOSON
Clavulariidae_g23314ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23315
Clavulariidae_g23316ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g23317ENDOSOMAL/LYSOSOMAL POTASSIUM CHANNEL TMEM175
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