About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g23318
Clavulariidae_g23319DEADENYLATION COMPLEX SUBUNIT PAN3
Clavulariidae_g2332DIGEORGE SYNDROME CRITICAL REGION 6 DGCR6 FAMILY MEMBER
Clavulariidae_g23320INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g23321TRANSMEMBRANE 9 SUPERFAMILY PROTEIN
Clavulariidae_g23322PAK1 INTERACTING PROTEIN 1
Clavulariidae_g23323INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g23324TRANSPOSASE, PUTATIVE-RELATED
Clavulariidae_g23325OS04G0629600 PROTEIN
Clavulariidae_g23326PROTEIN CBG26694
Clavulariidae_g23327
Clavulariidae_g23328PAIRED BOX PROTEIN PAX-6-RELATED-RELATED
Clavulariidae_g23329DIENCEPHALON/MESENCEPHALON HOMEOBOX PROTEIN 1
Clavulariidae_g2333GC-RICH SEQUENCE DNA-BINDING FACTOR
Clavulariidae_g23330
Clavulariidae_g23331HOMEOBOX PROTEIN ARISTALESS
Clavulariidae_g23332
Clavulariidae_g23333FORMATE ACETYLTRANSFERASE 3-RELATED
Clavulariidae_g23334ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23335ATP-BINDING CASSETTE SUB-FAMILY B
Clavulariidae_g23336RETROTRANSPOSON
Clavulariidae_g23337MITOGEN-ACTIVATED PROTEIN KINASE
Clavulariidae_g23338SPERMATHECAL PHYSIOLOGY VARIANT
Clavulariidae_g23339
Clavulariidae_g2334HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN
Clavulariidae_g23340
Clavulariidae_g23341SECRETED MODULAR CALCIUM-BINDING PROTEIN
Clavulariidae_g23342RETROTRANSPOSON
Clavulariidae_g23343REVERSE TRANSCRIPTASES
Clavulariidae_g23344RETROTRANSPOSON
Clavulariidae_g23345REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23346MORTALITY FACTOR 4-LIKE PROTEIN
Clavulariidae_g23347RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN
Clavulariidae_g23348DAP3-BINDING CELL DEATH ENHANCER 1
Clavulariidae_g23349
Clavulariidae_g2335PROTEIN MMS22-LIKE
Clavulariidae_g23350LEUCYL-TRNA SYNTHETASE
Clavulariidae_g23351
Clavulariidae_g23352DUF4793 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23353
Clavulariidae_g23354
Clavulariidae_g23355G PROTEIN-COUPLED RECEPTOR-RELATED
Clavulariidae_g23356NF-KAPPA-B INHIBITOR ALPHA
Clavulariidae_g23357ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g23358PROTEIN CBG26694
Clavulariidae_g23359SELENOPROTEIN S
Clavulariidae_g2336TNF RECEPTOR ASSOCIATED FACTOR
Clavulariidae_g23360NF-KAPPA-B INHIBITOR ALPHA
Clavulariidae_g23361NF-KAPPA-B INHIBITOR ALPHA
Clavulariidae_g23362RIBOSOMAL PROTEIN L17
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