About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g23453
Clavulariidae_g23454REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23455PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23456TYROSINE-PROTEIN KINASE RECEPTOR
Clavulariidae_g23457CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
Clavulariidae_g23458OPSIN
Clavulariidae_g23459CYSTEINE-RICH HYDROPHOBIC DOMAIN PROTEIN BRAIN X-LINKED PROTEIN
Clavulariidae_g2346
Clavulariidae_g23460HISTONE PARYLATION FACTOR 1
Clavulariidae_g2346152 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Clavulariidae_g23462LIPOPOLYSACCHARIDE CHOLINEPHOSPHOTRANSFERASE LICD
Clavulariidae_g23463
Clavulariidae_g23464REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23465PROTEIN ZERKNUELLT 1-RELATED
Clavulariidae_g2346626S PROTEASOME REGULATORY SUBUNIT
Clavulariidae_g2346730S/40S RIBOSOMAL PROTEIN S3
Clavulariidae_g23468CONTACTIN 5
Clavulariidae_g23469
Clavulariidae_g2347SPLICING FACTOR U2AF-ASSOCIATED PROTEIN 2
Clavulariidae_g23470
Clavulariidae_g23471RETROTRANSPOSON
Clavulariidae_g23472TRANSPOSASE
Clavulariidae_g23473
Clavulariidae_g23474CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g23475
Clavulariidae_g23476
Clavulariidae_g23477GLYPICAN
Clavulariidae_g23478COILED-COIL DOMAIN-CONTAINING PROTEIN 84
Clavulariidae_g23479RAP GTPASE-ACTIVATING PROTEIN
Clavulariidae_g2348CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 47
Clavulariidae_g23480
Clavulariidae_g23481SPARC OSTEONECTIN
Clavulariidae_g23482ATP-BINDING CASSETTE SUB-FAMILY B
Clavulariidae_g2348380 KDA MCM3-ASSOCIATED PROTEIN
Clavulariidae_g23484OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
Clavulariidae_g23485OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
Clavulariidae_g23486GLYCOGENIN SUBFAMILY MEMBER
Clavulariidae_g23487SIMILAR TO CHROMOSOME 3 OPEN READING FRAME 20
Clavulariidae_g23488CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 3
Clavulariidae_g23489PROLINE-, GLUTAMIC ACID- AND LEUCINE-RICH PROTEIN 1
Clavulariidae_g2349G PROTEIN-COUPLED RECEPTOR 157-RELATED
Clavulariidae_g23490REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23491GLYPICAN
Clavulariidae_g23492GLYPICAN
Clavulariidae_g23493RHOMBOID PROTEASE
Clavulariidae_g23494ANGIOMOTIN
Clavulariidae_g234952-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED
Clavulariidae_g234962-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED
Clavulariidae_g23497
Clavulariidae_g23498REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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