About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g23499
Clavulariidae_g235
Clavulariidae_g2350FOUR AND A HALF LIM DOMAINS PROTEIN
Clavulariidae_g23500SHORT STATURE HOMEOBOX
Clavulariidae_g23501UNCHARACTERIZED
Clavulariidae_g23502LATROPHILIN RECEPTOR-LIKE PROTEIN A
Clavulariidae_g23503GENE, 32742-RELATED-RELATED
Clavulariidae_g23504UPF0764 PROTEIN C16ORF89
Clavulariidae_g23505SHORT-CHAIN DEHYDROGENASE/REDUCTASE
Clavulariidae_g23506UNCHARACTERIZED
Clavulariidae_g23507ATP-DEPENDENT DNA HELICASE
Clavulariidae_g23508ATP-DEPENDENT DNA HELICASE
Clavulariidae_g23509UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
Clavulariidae_g2351SURFEIT LOCUS PROTEIN 6
Clavulariidae_g23510CARBOXYPEPTIDASE REGULATORY REGION-CONTAINING
Clavulariidae_g23511NUCLEAR FRAGILE X MENTAL RETARDATION PROTEIN INTERACTING PROTEIN 1
Clavulariidae_g23512E3 UBIQUITIN-PROTEIN LIGASE HECTD3
Clavulariidae_g23513
Clavulariidae_g23514
Clavulariidae_g23515CXXC-TYPE ZINC FINGER PROTEIN 1
Clavulariidae_g23516PROTEIN DOK-7
Clavulariidae_g23517TRANSMEMBRANE PROTEIN 246
Clavulariidae_g23518DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
Clavulariidae_g23519
Clavulariidae_g2352SERINE/ARGININE REGULATED NUCLEAR MATRIX PROTEIN
Clavulariidae_g23520REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23521
Clavulariidae_g23522RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR
Clavulariidae_g23523POLYCYSTIN FAMILY MEMBER
Clavulariidae_g23524VACUOLAR ATP SYNTHASE SUBUNIT S1
Clavulariidae_g23525PROTEASE FAMILY C26 GAMMA-GLUTAMYL HYDROLASE
Clavulariidae_g23526SINGLE-PASS MEMBRANE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 3
Clavulariidae_g23527CEREBELLIN-RELATED
Clavulariidae_g23528VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED
Clavulariidae_g23529SELENOPROTEIN O
Clavulariidae_g2353ACETYL-COA C-ACYLTRANSFERASE
Clavulariidae_g23530INNER NUCLEAR MEMBRANE PROTEIN MAN1 LEM DOMAIN CONTAINING PROTEIN
Clavulariidae_g23531SECY/SEC61-ALPHA FAMILY MEMBER
Clavulariidae_g23532
Clavulariidae_g23533
Clavulariidae_g23534NUCLEOPORIN
Clavulariidae_g23535RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN
Clavulariidae_g23536
Clavulariidae_g23537CYTOCHROME P450
Clavulariidae_g23538SUPPRESSION OF TUMORIGENICITY 7
Clavulariidae_g23539-
Clavulariidae_g2354
Clavulariidae_g23540
Clavulariidae_g23541REVERSE TRANSCRIPTASES
Clavulariidae_g23542
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