Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g23499 | |
Clavulariidae_g235 | |
Clavulariidae_g2350 | FOUR AND A HALF LIM DOMAINS PROTEIN |
Clavulariidae_g23500 | SHORT STATURE HOMEOBOX |
Clavulariidae_g23501 | UNCHARACTERIZED |
Clavulariidae_g23502 | LATROPHILIN RECEPTOR-LIKE PROTEIN A |
Clavulariidae_g23503 | GENE, 32742-RELATED-RELATED |
Clavulariidae_g23504 | UPF0764 PROTEIN C16ORF89 |
Clavulariidae_g23505 | SHORT-CHAIN DEHYDROGENASE/REDUCTASE |
Clavulariidae_g23506 | UNCHARACTERIZED |
Clavulariidae_g23507 | ATP-DEPENDENT DNA HELICASE |
Clavulariidae_g23508 | ATP-DEPENDENT DNA HELICASE |
Clavulariidae_g23509 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
Clavulariidae_g2351 | SURFEIT LOCUS PROTEIN 6 |
Clavulariidae_g23510 | CARBOXYPEPTIDASE REGULATORY REGION-CONTAINING |
Clavulariidae_g23511 | NUCLEAR FRAGILE X MENTAL RETARDATION PROTEIN INTERACTING PROTEIN 1 |
Clavulariidae_g23512 | E3 UBIQUITIN-PROTEIN LIGASE HECTD3 |
Clavulariidae_g23513 | |
Clavulariidae_g23514 | |
Clavulariidae_g23515 | CXXC-TYPE ZINC FINGER PROTEIN 1 |
Clavulariidae_g23516 | PROTEIN DOK-7 |
Clavulariidae_g23517 | TRANSMEMBRANE PROTEIN 246 |
Clavulariidae_g23518 | DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING |
Clavulariidae_g23519 | |
Clavulariidae_g2352 | SERINE/ARGININE REGULATED NUCLEAR MATRIX PROTEIN |
Clavulariidae_g23520 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g23521 | |
Clavulariidae_g23522 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR |
Clavulariidae_g23523 | POLYCYSTIN FAMILY MEMBER |
Clavulariidae_g23524 | VACUOLAR ATP SYNTHASE SUBUNIT S1 |
Clavulariidae_g23525 | PROTEASE FAMILY C26 GAMMA-GLUTAMYL HYDROLASE |
Clavulariidae_g23526 | SINGLE-PASS MEMBRANE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 3 |
Clavulariidae_g23527 | CEREBELLIN-RELATED |
Clavulariidae_g23528 | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED |
Clavulariidae_g23529 | SELENOPROTEIN O |
Clavulariidae_g2353 | ACETYL-COA C-ACYLTRANSFERASE |
Clavulariidae_g23530 | INNER NUCLEAR MEMBRANE PROTEIN MAN1 LEM DOMAIN CONTAINING PROTEIN |
Clavulariidae_g23531 | SECY/SEC61-ALPHA FAMILY MEMBER |
Clavulariidae_g23532 | |
Clavulariidae_g23533 | |
Clavulariidae_g23534 | NUCLEOPORIN |
Clavulariidae_g23535 | RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN |
Clavulariidae_g23536 | |
Clavulariidae_g23537 | CYTOCHROME P450 |
Clavulariidae_g23538 | SUPPRESSION OF TUMORIGENICITY 7 |
Clavulariidae_g23539 | - |
Clavulariidae_g2354 | |
Clavulariidae_g23540 | |
Clavulariidae_g23541 | REVERSE TRANSCRIPTASES |
Clavulariidae_g23542 |