Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g23589 | SACSIN |
Clavulariidae_g2359 | WASP-1 |
Clavulariidae_g23590 | |
Clavulariidae_g23591 | |
Clavulariidae_g23592 | |
Clavulariidae_g23593 | DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER |
Clavulariidae_g23594 | PROTEIN CBG26694 |
Clavulariidae_g23595 | RETROTRANSPOSON |
Clavulariidae_g23596 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g23597 | |
Clavulariidae_g23598 | SI:CH211-266K2.1 |
Clavulariidae_g23599 | |
Clavulariidae_g236 | UNCHARACTERIZED |
Clavulariidae_g2360 | WD REPEAT CONTAINING PROTEIN 3 WDR3 |
Clavulariidae_g23600 | |
Clavulariidae_g23601 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
Clavulariidae_g23602 | |
Clavulariidae_g23603 | |
Clavulariidae_g23604 | DNA POLYMERASE |
Clavulariidae_g23605 | FASTING-INDUCIBLE INTEGRAL MEMBRANE PROTEIN TM6P1-RELATED |
Clavulariidae_g23606 | G PROTEIN-COUPLED RECEPTOR |
Clavulariidae_g23607 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g23608 | SYNAPTOTAGMIN |
Clavulariidae_g23609 | |
Clavulariidae_g2361 | PIRIN-RELATED |
Clavulariidae_g23610 | |
Clavulariidae_g23611 | DNA HELICASE RECQ FAMILY MEMBER |
Clavulariidae_g23612 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g23613 | TRANSCRIPTION FACTOR GATA FAMILY MEMBER |
Clavulariidae_g23614 | RETROTRANSPOSON |
Clavulariidae_g23615 | CYCLINS |
Clavulariidae_g23616 | CYCLINS |
Clavulariidae_g23617 | STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE |
Clavulariidae_g23618 | PDZ DOMAIN-CONTAINING PROTEIN 8 |
Clavulariidae_g23619 | |
Clavulariidae_g2362 | SAM-DOMAIN, SH3 AND NUCLEAR LOCALIZATION SIGNALS PROTEIN RELATED |
Clavulariidae_g23620 | DYNEIN HEAVY CHAIN |
Clavulariidae_g23621 | TYROSINE-PROTEIN KINASE RECEPTOR |
Clavulariidae_g23622 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g23623 | ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4 |
Clavulariidae_g23624 | |
Clavulariidae_g23625 | |
Clavulariidae_g23626 | |
Clavulariidae_g23627 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g23628 | DUF3504 DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g23629 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER |
Clavulariidae_g2363 | RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN |
Clavulariidae_g23630 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g23631 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g23632 | RETROTRANSPOSON |