About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g23589SACSIN
Clavulariidae_g2359WASP-1
Clavulariidae_g23590
Clavulariidae_g23591
Clavulariidae_g23592
Clavulariidae_g23593DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER
Clavulariidae_g23594PROTEIN CBG26694
Clavulariidae_g23595RETROTRANSPOSON
Clavulariidae_g23596ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23597
Clavulariidae_g23598SI:CH211-266K2.1
Clavulariidae_g23599
Clavulariidae_g236UNCHARACTERIZED
Clavulariidae_g2360WD REPEAT CONTAINING PROTEIN 3 WDR3
Clavulariidae_g23600
Clavulariidae_g23601INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g23602
Clavulariidae_g23603
Clavulariidae_g23604DNA POLYMERASE
Clavulariidae_g23605FASTING-INDUCIBLE INTEGRAL MEMBRANE PROTEIN TM6P1-RELATED
Clavulariidae_g23606G PROTEIN-COUPLED RECEPTOR
Clavulariidae_g23607PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23608SYNAPTOTAGMIN
Clavulariidae_g23609
Clavulariidae_g2361PIRIN-RELATED
Clavulariidae_g23610
Clavulariidae_g23611DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g23612REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23613TRANSCRIPTION FACTOR GATA FAMILY MEMBER
Clavulariidae_g23614RETROTRANSPOSON
Clavulariidae_g23615CYCLINS
Clavulariidae_g23616CYCLINS
Clavulariidae_g23617STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE
Clavulariidae_g23618PDZ DOMAIN-CONTAINING PROTEIN 8
Clavulariidae_g23619
Clavulariidae_g2362SAM-DOMAIN, SH3 AND NUCLEAR LOCALIZATION SIGNALS PROTEIN RELATED
Clavulariidae_g23620DYNEIN HEAVY CHAIN
Clavulariidae_g23621TYROSINE-PROTEIN KINASE RECEPTOR
Clavulariidae_g23622REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23623ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4
Clavulariidae_g23624
Clavulariidae_g23625
Clavulariidae_g23626
Clavulariidae_g23627PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23628DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23629SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER
Clavulariidae_g2363RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN
Clavulariidae_g23630REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23631REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23632RETROTRANSPOSON
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