About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g23723SIMILAR TO RIKEN CDNA E130308A19
Clavulariidae_g23724SIMILAR TO RIKEN CDNA E130308A19
Clavulariidae_g23725SIMILAR TO RIKEN CDNA E130308A19
Clavulariidae_g23726RETROTRANSPOSON
Clavulariidae_g23727
Clavulariidae_g23728SIGNAL PEPTIDE, CUB AND EGF-LIKE DOMAIN-CONTAINING
Clavulariidae_g23729
Clavulariidae_g2373UBX DOMAIN CONTAINING PROTEIN
Clavulariidae_g23730PROTEIN CBG26694
Clavulariidae_g23731LEUCOKININ RECEPTOR-RELATED
Clavulariidae_g23732
Clavulariidae_g23733
Clavulariidae_g23734SI:CH211-266K2.1
Clavulariidae_g23735SIMILAR TO RIKEN CDNA E130308A19
Clavulariidae_g23736
Clavulariidae_g23737SI:CH211-196P9.1-RELATED
Clavulariidae_g23738
Clavulariidae_g23739REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g2374OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
Clavulariidae_g23740
Clavulariidae_g23741ENDONUCLEASE-RELATED
Clavulariidae_g23742PROTEIN CBG26694
Clavulariidae_g23743MULTICOPPER OXIDASE-RELATED
Clavulariidae_g23744THAP DOMAIN PROTEIN
Clavulariidae_g23745MULTICOPPER OXIDASE-RELATED
Clavulariidae_g23746
Clavulariidae_g23747ADHESION G PROTEIN-COUPLED RECEPTOR G7
Clavulariidae_g23748PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23749LEUCOKININ RECEPTOR-RELATED
Clavulariidae_g2375TNF RECEPTOR ASSOCIATED FACTOR
Clavulariidae_g23750
Clavulariidae_g23751PROTEIN CBG26694
Clavulariidae_g23752LEUCOKININ RECEPTOR-RELATED
Clavulariidae_g23753ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23754REVERSE TRANSCRIPTASES
Clavulariidae_g23755
Clavulariidae_g23756
Clavulariidae_g23757ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23758REVERSE TRANSCRIPTASE
Clavulariidae_g23759COLLAGEN ALPHA
Clavulariidae_g2376
Clavulariidae_g23760DNA-BINDING PROTEIN-RELATED-RELATED
Clavulariidae_g23761
Clavulariidae_g23762DNA POLYMERASE
Clavulariidae_g23763SI:CH211-196P9.1-RELATED
Clavulariidae_g23764
Clavulariidae_g23765IP13529P
Clavulariidae_g23766IP13529P
Clavulariidae_g23767SI:CH211-196P9.1-RELATED
Clavulariidae_g23768TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
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