Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g23723 | SIMILAR TO RIKEN CDNA E130308A19 |
Clavulariidae_g23724 | SIMILAR TO RIKEN CDNA E130308A19 |
Clavulariidae_g23725 | SIMILAR TO RIKEN CDNA E130308A19 |
Clavulariidae_g23726 | RETROTRANSPOSON |
Clavulariidae_g23727 | |
Clavulariidae_g23728 | SIGNAL PEPTIDE, CUB AND EGF-LIKE DOMAIN-CONTAINING |
Clavulariidae_g23729 | |
Clavulariidae_g2373 | UBX DOMAIN CONTAINING PROTEIN |
Clavulariidae_g23730 | PROTEIN CBG26694 |
Clavulariidae_g23731 | LEUCOKININ RECEPTOR-RELATED |
Clavulariidae_g23732 | |
Clavulariidae_g23733 | |
Clavulariidae_g23734 | SI:CH211-266K2.1 |
Clavulariidae_g23735 | SIMILAR TO RIKEN CDNA E130308A19 |
Clavulariidae_g23736 | |
Clavulariidae_g23737 | SI:CH211-196P9.1-RELATED |
Clavulariidae_g23738 | |
Clavulariidae_g23739 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g2374 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
Clavulariidae_g23740 | |
Clavulariidae_g23741 | ENDONUCLEASE-RELATED |
Clavulariidae_g23742 | PROTEIN CBG26694 |
Clavulariidae_g23743 | MULTICOPPER OXIDASE-RELATED |
Clavulariidae_g23744 | THAP DOMAIN PROTEIN |
Clavulariidae_g23745 | MULTICOPPER OXIDASE-RELATED |
Clavulariidae_g23746 | |
Clavulariidae_g23747 | ADHESION G PROTEIN-COUPLED RECEPTOR G7 |
Clavulariidae_g23748 | PX DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g23749 | LEUCOKININ RECEPTOR-RELATED |
Clavulariidae_g2375 | TNF RECEPTOR ASSOCIATED FACTOR |
Clavulariidae_g23750 | |
Clavulariidae_g23751 | PROTEIN CBG26694 |
Clavulariidae_g23752 | LEUCOKININ RECEPTOR-RELATED |
Clavulariidae_g23753 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g23754 | REVERSE TRANSCRIPTASES |
Clavulariidae_g23755 | |
Clavulariidae_g23756 | |
Clavulariidae_g23757 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g23758 | REVERSE TRANSCRIPTASE |
Clavulariidae_g23759 | COLLAGEN ALPHA |
Clavulariidae_g2376 | |
Clavulariidae_g23760 | DNA-BINDING PROTEIN-RELATED-RELATED |
Clavulariidae_g23761 | |
Clavulariidae_g23762 | DNA POLYMERASE |
Clavulariidae_g23763 | SI:CH211-196P9.1-RELATED |
Clavulariidae_g23764 | |
Clavulariidae_g23765 | IP13529P |
Clavulariidae_g23766 | IP13529P |
Clavulariidae_g23767 | SI:CH211-196P9.1-RELATED |
Clavulariidae_g23768 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |