Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ～1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
| Gene ID | Description |
|---|---|
| Clavulariidae_g23813 | PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1 |
| Clavulariidae_g23814 | PROTEIN YAE1 HOMOLOG |
| Clavulariidae_g23815 | CELL DIVISION PROTEIN KINASE |
| Clavulariidae_g23816 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g23817 | RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY |
| Clavulariidae_g23818 | CCA TRNA NUCLEOTIDYLTRANSFERASE 1, MITOCHONDRIAL |
| Clavulariidae_g23819 | MPS ONE BINDER KINASE ACTIVATOR-LIKE MOB |
| Clavulariidae_g2382 | DNA POLYMERASE I |
| Clavulariidae_g23820 | PROTEIN CBG26694 |
| Clavulariidae_g23821 | |
| Clavulariidae_g23822 | ADP RIBOSYLATION FACTOR-RELATED |
| Clavulariidae_g23823 | UNCHARACTERIZED |
| Clavulariidae_g23824 | |
| Clavulariidae_g23825 | CYCLIC NUCLEOTIDE PHOSPHODIESTERASE |
| Clavulariidae_g23826 | |
| Clavulariidae_g23827 | |
| Clavulariidae_g23828 | CHIMERIN FAMILY MEMBER |
| Clavulariidae_g23829 | POLY A POLYMERASE CID PAP -RELATED |
| Clavulariidae_g2383 | |
| Clavulariidae_g23830 | INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g23831 | |
| Clavulariidae_g23832 | |
| Clavulariidae_g23833 | CYTOKINE RECEPTOR |
| Clavulariidae_g23834 | |
| Clavulariidae_g23835 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| Clavulariidae_g23836 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g23837 | AGAP005574-PA |
| Clavulariidae_g23838 | |
| Clavulariidae_g23839 | |
| Clavulariidae_g2384 | 60S RIBOSOMAL PROTEIN L24 |
| Clavulariidae_g23840 | |
| Clavulariidae_g23841 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
| Clavulariidae_g23842 | |
| Clavulariidae_g23843 | |
| Clavulariidae_g23844 | |
| Clavulariidae_g23845 | VERTNIN |
| Clavulariidae_g23846 | |
| Clavulariidae_g23847 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g23848 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g23849 | |
| Clavulariidae_g2385 | HISTONE DEACETYLASE HDAC1-RELATED |
| Clavulariidae_g23850 | |
| Clavulariidae_g23851 | |
| Clavulariidae_g23852 | RETROTRANSPOSON |
| Clavulariidae_g23853 | SI:CH211-196P9.1-RELATED |
| Clavulariidae_g23854 | COLLAGEN ALPHA |
| Clavulariidae_g23855 | TOL-PAL SYSTEM PROTEIN TOLA |
| Clavulariidae_g23856 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g23857 | BAX INHIBITOR-RELATED |
| Clavulariidae_g23858 | TNF RECEPTOR ASSOCIATED FACTOR |
