About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g23543ELONGATION FACTOR G, MITOCHONDRIAL
Clavulariidae_g23544UNCHARACTERIZED
Clavulariidae_g23545BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
Clavulariidae_g23546ALPHA-1,6-MANNOSYLTRANSFERASE MNN11-RELATED
Clavulariidae_g23547
Clavulariidae_g23548CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g23549
Clavulariidae_g2355FRIZZLED
Clavulariidae_g23550INTERFERON-RELATED DEVELOPMENTAL REGULATOR
Clavulariidae_g23551
Clavulariidae_g23552UNCHARACTERIZED
Clavulariidae_g23553LEUCINE-RICH REPEAT-CONTAINING PROTEIN 51
Clavulariidae_g23554ENDO-1,4-BETA-GLUCANASE
Clavulariidae_g23555
Clavulariidae_g23556ENDO-1,4-BETA-GLUCANASE
Clavulariidae_g23557BETA-GALACTOSIDASE RELATED
Clavulariidae_g23558ZINC FINGER PROTEIN
Clavulariidae_g23559PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY G MEMBER 7
Clavulariidae_g2356
Clavulariidae_g23560ZINC FINGER PROTEIN 277
Clavulariidae_g23561
Clavulariidae_g23562RNA RECOGNITION MOTIF-CONTAINING
Clavulariidae_g23563SERINE/THREONINE-PROTEIN KINASE
Clavulariidae_g23564RHO-GTPASE-ACTIVATING PROTEIN 6 FAMILY MEMBER
Clavulariidae_g23565RETROTRANSPOSON
Clavulariidae_g23566KRAB AND ZINC FINGER DOMAIN-CONTAINING
Clavulariidae_g23567ZINC FINGER PROTEIN 200
Clavulariidae_g23568
Clavulariidae_g23569
Clavulariidae_g2357
Clavulariidae_g23570ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING
Clavulariidae_g23571ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23572ZINC FINGER AND SCAN DOMAIN-CONTAINING
Clavulariidae_g23573ZINC FINGER AND BTB DOMAIN-CONTAINING
Clavulariidae_g23574RETROTRANSPOSON
Clavulariidae_g23575PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23576SARCOMA ANTIGEN NY-SAR-24/CYTOSKELETAL PROTEIN SOJO
Clavulariidae_g23577SI:DKEY-19B23.7
Clavulariidae_g23578
Clavulariidae_g23579REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g2358FRIZZLED
Clavulariidae_g23580DUAL SERINE/THREONINE AND TYROSINE PROTEIN KINASE
Clavulariidae_g23581NUCLEOLAR PROTEIN 8
Clavulariidae_g23582CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE
Clavulariidae_g23583TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 2
Clavulariidae_g23584PERICENTRIOLAR MATERIAL 1-RELATED
Clavulariidae_g23585KINESIN-RELATED
Clavulariidae_g23586COMM DOMAIN-CONTAINING PROTEIN 4-8 FAMILY MEMBER
Clavulariidae_g23587RAD54-LIKE
Clavulariidae_g23588-
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