About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g23408
Clavulariidae_g23409
Clavulariidae_g2341CHARGED MULTIVESICULAR BODY PROTEIN
Clavulariidae_g23410
Clavulariidae_g23411PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23412
Clavulariidae_g23413
Clavulariidae_g23414
Clavulariidae_g23415
Clavulariidae_g23416
Clavulariidae_g23417TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g23418
Clavulariidae_g23419TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g2342SH3 DOMAIN-CONTAINING
Clavulariidae_g23420
Clavulariidae_g23421
Clavulariidae_g23422
Clavulariidae_g23423
Clavulariidae_g23424RETROTRANSPOSON
Clavulariidae_g23425TYROSINE-PROTEIN KINASE RECEPTOR
Clavulariidae_g23426PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23427REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23428PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23429PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g2343
Clavulariidae_g23430POL PROTEIN
Clavulariidae_g23431
Clavulariidae_g23432
Clavulariidae_g23433PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23434PROTEIN CBG26694
Clavulariidae_g23435PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23436
Clavulariidae_g23437ENDONUCLEASE-RELATED
Clavulariidae_g23438PROTEIN CBG26694
Clavulariidae_g23439EXPRESSED PROTEIN
Clavulariidae_g2344CALPONIN
Clavulariidae_g23440
Clavulariidae_g23441CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g23442
Clavulariidae_g23443UNCHARACTERIZED
Clavulariidae_g23444
Clavulariidae_g23445RETROTRANSPOSON
Clavulariidae_g23446TYROSINE-PROTEIN KINASE RECEPTOR
Clavulariidae_g23447NEPHRIN
Clavulariidae_g23448
Clavulariidae_g23449RETROTRANSPOSON
Clavulariidae_g2345SODIUM/NUCLEOSIDE COTRANSPORTER
Clavulariidae_g23450DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
Clavulariidae_g23451ALPHA-MANNOSIDASE 2C1
Clavulariidae_g23452
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