About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g23183ALDEHYDE DEHYDROGENASE-RELATED
Clavulariidae_g23184EGF-LIKE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23185TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN
Clavulariidae_g23186RECEPTOR TRANSPORTING PROTEIN
Clavulariidae_g23187CADHERIN-23
Clavulariidae_g23188REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23189DNAJ HOMOLOG SUBFAMILY C MEMBER
Clavulariidae_g2319DNAJ HOMOLOG SUBFAMILY C MEMBER
Clavulariidae_g23190RIB43A-RELATED
Clavulariidae_g23191UBIQUITIN-ACTIVATING ENZYME E1
Clavulariidae_g23192REVERSE TRANSCRIPTASES
Clavulariidae_g23193EXPRESSED PROTEIN
Clavulariidae_g23194
Clavulariidae_g23195AMINO ACID TRANSPORTER
Clavulariidae_g23196
Clavulariidae_g231972-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED
Clavulariidae_g23198BLL3101 PROTEIN
Clavulariidae_g23199DNA-DIRECTED RNA POLYMERASE I,II,III
Clavulariidae_g232REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g2320DNAJ HOMOLOG SUBFAMILY C MEMBER
Clavulariidae_g23200DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g23201
Clavulariidae_g23202
Clavulariidae_g23203PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE
Clavulariidae_g23204ZINC FINGER PROTEIN
Clavulariidae_g23205PROTEIN CBG26694
Clavulariidae_g23206RETROTRANSPOSON
Clavulariidae_g23207GEM-ASSOCIATED PROTEIN 8
Clavulariidae_g23208OSMOTIC AVOIDANCE ABNORMAL PROTEIN 1/WD REPEAT MEMBRANE PROTEIN
Clavulariidae_g23209PROTEIN CBG26694
Clavulariidae_g2321HEPARAN SULFATE 2-O-SULFOTRANSFERASE
Clavulariidae_g23210
Clavulariidae_g23211PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23212PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23213ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23214
Clavulariidae_g23215KELCH PROTEIN
Clavulariidae_g23216UBIQUITIN-PROTEIN LIGASE E3C
Clavulariidae_g23217SERINE-THREONINE PROTEIN KINASE
Clavulariidae_g23218EXPRESSED PROTEIN
Clavulariidae_g23219KINESIN LIGHT CHAIN
Clavulariidae_g2322ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23220
Clavulariidae_g23221REVERSE TRANSCRIPTASES
Clavulariidae_g23222LIPOYL SYNTHASE
Clavulariidae_g23223UNCHARACTERIZED
Clavulariidae_g23224VACUOLAR PROTEIN SORTING 26 RELATED
Clavulariidae_g23225CYSTATHIONINE BETA-SYNTHASE
Clavulariidae_g23226MIR DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23227GLYCERATE KINASE
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