Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ～1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
| Gene ID | Description |
|---|---|
| Clavulariidae_g23048 | |
| Clavulariidae_g23049 | PROTEIN CBG26694 |
| Clavulariidae_g2305 | GAF/PUTATIVE CYTOSKELETAL PROTEIN |
| Clavulariidae_g23050 | |
| Clavulariidae_g23051 | RETROTRANSPOSON |
| Clavulariidae_g23052 | |
| Clavulariidae_g23053 | PYRROLINE-5-CARBOXYLATE REDUCTASE |
| Clavulariidae_g23054 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g23055 | PHOSPHATASE WITH HOMOLOGY TO TENSIN |
| Clavulariidae_g23056 | |
| Clavulariidae_g23057 | GABA-B RECEPTOR |
| Clavulariidae_g23058 | N-ACETYLGLUCOSAMINE-6-PHOSPHATE DEACETYLASE |
| Clavulariidae_g23059 | MOTILE SPERM DOMAIN-CONTAINING PROTEIN 2 |
| Clavulariidae_g2306 | ZINC FINGER PROTEIN |
| Clavulariidae_g23060 | STEROL DESATURASE |
| Clavulariidae_g23061 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Clavulariidae_g23062 | METHYLTRANSFERASE-RELATED |
| Clavulariidae_g23063 | - |
| Clavulariidae_g23064 | NUCLEOSIDE DIPHOSPHATE KINASE |
| Clavulariidae_g23065 | REVERSE TRANSCRIPTASES |
| Clavulariidae_g23066 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
| Clavulariidae_g23067 | THIOESTERASE 1/PROTEASE 1/LYSOPHOSPHOLIPASE L1 |
| Clavulariidae_g23068 | |
| Clavulariidae_g23069 | CONDENSIN-2 COMPLEX SUBUNIT H2 |
| Clavulariidae_g2307 | FLAVIN REDUCTASE-RELATED |
| Clavulariidae_g23070 | |
| Clavulariidae_g23071 | DNA REPAIR/RNA PROCESSING CPSF FAMILY |
| Clavulariidae_g23072 | |
| Clavulariidae_g23073 | ARCHAEMETZINCIN |
| Clavulariidae_g23074 | REVERSE TRANSCRIPTASES |
| Clavulariidae_g23075 | |
| Clavulariidae_g23076 | |
| Clavulariidae_g23077 | SULFATASE MODIFYING FACTOR 1, 2 |
| Clavulariidae_g23078 | |
| Clavulariidae_g23079 | |
| Clavulariidae_g2308 | CELL DIVISION CYCLE 5-LIKE PROTEIN |
| Clavulariidae_g23080 | REVERSE TRANSCRIPTASES |
| Clavulariidae_g23081 | SERINE-THREONINE PROTEIN KINASE |
| Clavulariidae_g23082 | OTU DOMAIN CONTAINING PROTEIN |
| Clavulariidae_g23083 | ATP-DEPENDENT DNA HELICASE |
| Clavulariidae_g23084 | ZGC:195170 |
| Clavulariidae_g23085 | |
| Clavulariidae_g23086 | ATP-DEPENDENT DNA HELICASE |
| Clavulariidae_g23087 | |
| Clavulariidae_g23088 | RETROTRANSPOSON |
| Clavulariidae_g23089 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g2309 | RIBOSOMAL PROTEIN L19 |
| Clavulariidae_g23090 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g23091 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g23092 |
