About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g22823REGULATORY PROTEIN ZESTE
Clavulariidae_g22824EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22825INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g22826
Clavulariidae_g22827PROTEIN CBG26694
Clavulariidae_g22828
Clavulariidae_g22829DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g2283UNCHARACTERIZED
Clavulariidae_g22830
Clavulariidae_g22831DNA POLYMERASE
Clavulariidae_g22832
Clavulariidae_g22833CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g22834PROTEIN CBG26694
Clavulariidae_g22835REGULATORY PROTEIN ZESTE
Clavulariidae_g22836EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22837PROTEIN CBG26694
Clavulariidae_g22838PROTEIN CBG26694
Clavulariidae_g22839KERATIN, ULTRA HIGH-SULFUR MATRIX PROTEIN-LIKE
Clavulariidae_g2284INTERLEUKIN-1 RECEPTOR-ASSOCIATED KINASE 1-BINDING PROTEIN 1
Clavulariidae_g22840DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22841
Clavulariidae_g22842DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g22843
Clavulariidae_g22844
Clavulariidae_g22845ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22846DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22847SI:CH211-196P9.1-RELATED
Clavulariidae_g22848INTELECTIN
Clavulariidae_g22849INTELECTIN
Clavulariidae_g2285UNCHARACTERIZED
Clavulariidae_g22850TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)
Clavulariidae_g22851ENDONUCLEASE IV ENDODEOXYRIBONUCLEASE IV
Clavulariidae_g22852REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22853
Clavulariidae_g22854
Clavulariidae_g22855PROTEIN CBG23806
Clavulariidae_g22856
Clavulariidae_g22857ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22858REVERSE TRANSCRIPTASES
Clavulariidae_g22859UNCHARACTERIZED
Clavulariidae_g2286CALCIPRESSIN
Clavulariidae_g22860
Clavulariidae_g22861THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g22862
Clavulariidae_g22863APPLE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22864TRANSMEMBRANE PROTEIN 121B
Clavulariidae_g22865CATION TRANSPORTING ATPASE
Clavulariidae_g22866
Clavulariidae_g22867CATION TRANSPORTING ATPASE
Clavulariidae_g22868ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
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