About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g22643PROTEIN CBG26694
Clavulariidae_g22644REVERSE TRANSCRIPTASES
Clavulariidae_g22645CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
Clavulariidae_g22646ATP-DEPENDENT DNA HELICASE
Clavulariidae_g22647
Clavulariidae_g22648
Clavulariidae_g22649
Clavulariidae_g2265PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22650
Clavulariidae_g22651
Clavulariidae_g22652INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22653REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22654
Clavulariidae_g22655RETROTRANSPOSON
Clavulariidae_g22656
Clavulariidae_g22657REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g226585-HYDROXYTRYPTAMINE RECEPTOR
Clavulariidae_g22659
Clavulariidae_g2266IP13529P
Clavulariidae_g22660
Clavulariidae_g22661HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Clavulariidae_g22662
Clavulariidae_g22663ZINC FINGER, RING/FYVE/PHD-TYPE
Clavulariidae_g22664
Clavulariidae_g22665-
Clavulariidae_g22666
Clavulariidae_g22667
Clavulariidae_g22668TNF RECEPTOR ASSOCIATED FACTOR
Clavulariidae_g22669
Clavulariidae_g2267RETROTRANSPOSON
Clavulariidae_g22670COLLAGEN ALPHA
Clavulariidae_g22671
Clavulariidae_g22672
Clavulariidae_g22673EXPRESSED PROTEIN
Clavulariidae_g22674RETROTRANSPOSON
Clavulariidae_g22675RETROTRANSPOSON
Clavulariidae_g22676REVERSE TRANSCRIPTASES
Clavulariidae_g22677
Clavulariidae_g22678PROTEIN CBG26694
Clavulariidae_g22679PROTEIN CBG26694
Clavulariidae_g2268
Clavulariidae_g22680
Clavulariidae_g22681TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g22682HMG DOMAIN-CONTAINING PROTEIN 3
Clavulariidae_g22683THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g22684LEUCOKININ RECEPTOR-RELATED
Clavulariidae_g22685LEUCOKININ RECEPTOR-RELATED
Clavulariidae_g22686ANTHRAX TOXIN RECEPTOR
Clavulariidae_g22687REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22688REVERSE TRANSCRIPTASES
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