About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g22599
Clavulariidae_g226
Clavulariidae_g2260ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g22600
Clavulariidae_g22601
Clavulariidae_g22602
Clavulariidae_g22603REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22604BEIGE/BEACH-RELATED
Clavulariidae_g22605REVERSE TRANSCRIPTASES
Clavulariidae_g22606
Clavulariidae_g22607
Clavulariidae_g22608AMINO ACID TRANSPORTER
Clavulariidae_g22609TRANSPOSASE, PUTATIVE-RELATED
Clavulariidae_g2261REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22610
Clavulariidae_g22611
Clavulariidae_g22612
Clavulariidae_g22613
Clavulariidae_g22614
Clavulariidae_g22615
Clavulariidae_g22616WINS1, 2 PROTEIN
Clavulariidae_g22617
Clavulariidae_g22618WINS1, 2 PROTEIN
Clavulariidae_g22619OSTEOCLAST-STIMULATING FACTOR 1
Clavulariidae_g2262SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g22620PEPTIDYL-GLYCINE ALPHA-AMIDATING MONOOXYGENASE
Clavulariidae_g22621
Clavulariidae_g22622LD33804P
Clavulariidae_g22623LD33804P
Clavulariidae_g22624LD33804P
Clavulariidae_g22625MITOCHONDRIAL GLYCINE TRANSPORTER
Clavulariidae_g22626
Clavulariidae_g22627
Clavulariidae_g22628M7GPPPN-MRNA HYDROLASE
Clavulariidae_g22629HISTONE H1
Clavulariidae_g2263ZGC:195170
Clavulariidae_g22630HISTONE H1
Clavulariidae_g22631HISTONE H1
Clavulariidae_g22632HISTONE H1
Clavulariidae_g22633HISTONE H2B
Clavulariidae_g22634
Clavulariidae_g22635HISTONE H1
Clavulariidae_g22636
Clavulariidae_g22637REVERSE TRANSCRIPTASES
Clavulariidae_g22638TRANSPOSASE
Clavulariidae_g22639TNF RECEPTOR ASSOCIATED FACTOR
Clavulariidae_g2264
Clavulariidae_g22640TNF RECEPTOR ASSOCIATED FACTOR
Clavulariidae_g22641ZINC FINGER, RING/FYVE/PHD-TYPE
Clavulariidae_g22642PROTEIN CBG26694
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