About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g22733ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22734
Clavulariidae_g22735OVARIAN CARCINOMA ANTIGEN CA125-RELATED
Clavulariidae_g22736IRE1-RELATED
Clavulariidae_g22737REVERSE TRANSCRIPTASES
Clavulariidae_g22738
Clavulariidae_g22739CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g2274
Clavulariidae_g22740SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g22741ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22742REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22743RETROTRANSPOSON
Clavulariidae_g22744
Clavulariidae_g22745CYTOSOLIC 5'-NUCLEOTIDASE 1 FAMILY MEMBER
Clavulariidae_g22746CYTOSOLIC 5'-NUCLEOTIDASE 1 FAMILY MEMBER
Clavulariidae_g22747SI:DKEY-29D5.2
Clavulariidae_g22748ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22749SOLUTE CARRIER FAMILY 22 MEMBER
Clavulariidae_g2275
Clavulariidae_g22750
Clavulariidae_g22751
Clavulariidae_g22752
Clavulariidae_g22753C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22754OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
Clavulariidae_g22755OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
Clavulariidae_g22756OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
Clavulariidae_g22757
Clavulariidae_g22758RAPSYN-RELATED
Clavulariidae_g22759TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g2276REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22760
Clavulariidae_g22761ANTHRAX TOXIN RECEPTOR
Clavulariidae_g22762
Clavulariidae_g22763PROTEIN CBG26694
Clavulariidae_g22764
Clavulariidae_g22765
Clavulariidae_g22766REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22767
Clavulariidae_g22768RETROTRANSPOSON
Clavulariidae_g22769RETROTRANSPOSON
Clavulariidae_g2277TRANSCRIPTION ELONGATION FACTOR A
Clavulariidae_g22770ATP-DEPENDENT DNA HELICASE
Clavulariidae_g22771ATP-DEPENDENT DNA HELICASE
Clavulariidae_g22772ATP-DEPENDENT DNA HELICASE
Clavulariidae_g22773RING FINGER AND SWIM DOMAIN-CONTAINING PROTEIN 2
Clavulariidae_g22774
Clavulariidae_g22775SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g22776ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22777THIOESTERASE 1/PROTEASE 1/LYSOPHOSPHOLIPASE L1
Clavulariidae_g22778UBIQUITIN
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