Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g22733 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g22734 | |
Clavulariidae_g22735 | OVARIAN CARCINOMA ANTIGEN CA125-RELATED |
Clavulariidae_g22736 | IRE1-RELATED |
Clavulariidae_g22737 | REVERSE TRANSCRIPTASES |
Clavulariidae_g22738 | |
Clavulariidae_g22739 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g2274 | |
Clavulariidae_g22740 | SI:CH211-108C17.2-RELATED-RELATED |
Clavulariidae_g22741 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g22742 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g22743 | RETROTRANSPOSON |
Clavulariidae_g22744 | |
Clavulariidae_g22745 | CYTOSOLIC 5'-NUCLEOTIDASE 1 FAMILY MEMBER |
Clavulariidae_g22746 | CYTOSOLIC 5'-NUCLEOTIDASE 1 FAMILY MEMBER |
Clavulariidae_g22747 | SI:DKEY-29D5.2 |
Clavulariidae_g22748 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g22749 | SOLUTE CARRIER FAMILY 22 MEMBER |
Clavulariidae_g2275 | |
Clavulariidae_g22750 | |
Clavulariidae_g22751 | |
Clavulariidae_g22752 | |
Clavulariidae_g22753 | C2H2-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g22754 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
Clavulariidae_g22755 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
Clavulariidae_g22756 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
Clavulariidae_g22757 | |
Clavulariidae_g22758 | RAPSYN-RELATED |
Clavulariidae_g22759 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g2276 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g22760 | |
Clavulariidae_g22761 | ANTHRAX TOXIN RECEPTOR |
Clavulariidae_g22762 | |
Clavulariidae_g22763 | PROTEIN CBG26694 |
Clavulariidae_g22764 | |
Clavulariidae_g22765 | |
Clavulariidae_g22766 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g22767 | |
Clavulariidae_g22768 | RETROTRANSPOSON |
Clavulariidae_g22769 | RETROTRANSPOSON |
Clavulariidae_g2277 | TRANSCRIPTION ELONGATION FACTOR A |
Clavulariidae_g22770 | ATP-DEPENDENT DNA HELICASE |
Clavulariidae_g22771 | ATP-DEPENDENT DNA HELICASE |
Clavulariidae_g22772 | ATP-DEPENDENT DNA HELICASE |
Clavulariidae_g22773 | RING FINGER AND SWIM DOMAIN-CONTAINING PROTEIN 2 |
Clavulariidae_g22774 | |
Clavulariidae_g22775 | SI:CH211-108C17.2-RELATED-RELATED |
Clavulariidae_g22776 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g22777 | THIOESTERASE 1/PROTEASE 1/LYSOPHOSPHOLIPASE L1 |
Clavulariidae_g22778 | UBIQUITIN |