Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g22463 | HTH CENPB-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g22464 | RAPSYN-RELATED |
Clavulariidae_g22465 | |
Clavulariidae_g22466 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g22467 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
Clavulariidae_g22468 | CHLOROPHYLL SYNTHASE |
Clavulariidae_g22469 | AMIDOPHOSPHORIBOSYLTRANSFERASE |
Clavulariidae_g2247 | 5'-METHYLTHIOADENOSINE/S-ADENOSYLHOMOCYSTEINE NUCLEOSIDASE |
Clavulariidae_g22470 | MULTIFUNCTIONAL PROTEIN ADE2 |
Clavulariidae_g22471 | |
Clavulariidae_g22472 | REGULATORY PROTEIN ZESTE |
Clavulariidae_g22473 | |
Clavulariidae_g22474 | DUF3504 DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g22475 | REVERSE TRANSCRIPTASES |
Clavulariidae_g22476 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g22477 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g22478 | SI:CH211-108C17.2-RELATED-RELATED |
Clavulariidae_g22479 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g2248 | PROTEIN SERAC1 |
Clavulariidae_g22480 | SI:CH211-108C17.2-RELATED-RELATED |
Clavulariidae_g22481 | TRANSPOSASE |
Clavulariidae_g22482 | |
Clavulariidae_g22483 | |
Clavulariidae_g22484 | RAS-LIKE FAMILY MEMBER 11 |
Clavulariidae_g22485 | |
Clavulariidae_g22486 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g22487 | SORTILIN RELATED |
Clavulariidae_g22488 | |
Clavulariidae_g22489 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g2249 | |
Clavulariidae_g22490 | METHYLTRANSFERASE |
Clavulariidae_g22491 | RETROTRANSPOSON |
Clavulariidae_g22492 | PROTEIN ARGININE N-METHYLTRANSFERASE |
Clavulariidae_g22493 | |
Clavulariidae_g22494 | GLPR-RELATED TRANSCRIPTIONAL REPRESSOR |
Clavulariidae_g22495 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g22496 | RETROTRANSPOSON |
Clavulariidae_g22497 | |
Clavulariidae_g22498 | |
Clavulariidae_g22499 | INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g225 | SI:CH211-108C17.2-RELATED-RELATED |
Clavulariidae_g2250 | - |
Clavulariidae_g22500 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g22501 | PROTEIN ARGININE N-METHYLTRANSFERASE |
Clavulariidae_g22502 | |
Clavulariidae_g22503 | RETROTRANSPOSON |
Clavulariidae_g22504 | |
Clavulariidae_g22505 | SI:CH211-108C17.2-RELATED-RELATED |
Clavulariidae_g22506 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g22507 | PROTEIN CBG26694 |