Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g23363 | METABOTROPIC GLUTAMATE RECEPTOR |
Clavulariidae_g23364 | CEH-10 HOMEODOMAIN-CONTAINING HOMOLOG |
Clavulariidae_g23365 | |
Clavulariidae_g23366 | PROTEASE S8 TRIPEPTIDYL PEPTIDASE I CLN2 |
Clavulariidae_g23367 | MONOCARBOXYLATE TRANSPORTER |
Clavulariidae_g23368 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g23369 | SERINE-THREONINE PROTEIN KINASE |
Clavulariidae_g2337 | KINESIN-RELATED |
Clavulariidae_g23370 | RING-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g23371 | ZINC FINGER B-BOX DOMAIN-CONTAINING PROTEIN 1 |
Clavulariidae_g23372 | UNCHARACTERIZED |
Clavulariidae_g23373 | |
Clavulariidae_g23374 | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED |
Clavulariidae_g23375 | CRYPTOCHROME |
Clavulariidae_g23376 | FERM DOMAIN-CONTAINING PROTEIN 4 |
Clavulariidae_g23377 | DESMOGLEIN FAMILY MEMBER |
Clavulariidae_g23378 | CADHERIN-23 |
Clavulariidae_g23379 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g2338 | KINESIN-RELATED |
Clavulariidae_g23380 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g23381 | ZINC FINGER PROTEIN |
Clavulariidae_g23382 | ANOCTAMIN |
Clavulariidae_g23383 | TGF-BETA FAMILY |
Clavulariidae_g23384 | REVERSE TRANSCRIPTASES |
Clavulariidae_g23385 | HISTIDYL-TRNA SYNTHETASE |
Clavulariidae_g23386 | COILED-COIL DOMAIN-CONTAINING PROTEIN 169 |
Clavulariidae_g23387 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
Clavulariidae_g23388 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
Clavulariidae_g23389 | EXPRESSED PROTEIN |
Clavulariidae_g2339 | NUCLEOTIDE KINASE |
Clavulariidae_g23390 | |
Clavulariidae_g23391 | |
Clavulariidae_g23392 | PX DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g23393 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g23394 | T CELL-SPECIFIC ADAPTER PROTEIN TSAD |
Clavulariidae_g23395 | |
Clavulariidae_g23396 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g23397 | |
Clavulariidae_g23398 | |
Clavulariidae_g23399 | ENDONUCLEASE-RELATED |
Clavulariidae_g234 | TELOMERASE REVERSE TRANSCRIPTASE |
Clavulariidae_g2340 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VTA1 HOMOLOG |
Clavulariidae_g23400 | |
Clavulariidae_g23401 | RETROTRANSPOSON |
Clavulariidae_g23402 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g23403 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g23404 | TYROSINE-PROTEIN KINASE RECEPTOR |
Clavulariidae_g23405 | COLLAGEN ALPHA |
Clavulariidae_g23406 | |
Clavulariidae_g23407 |