About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g23363METABOTROPIC GLUTAMATE RECEPTOR
Clavulariidae_g23364CEH-10 HOMEODOMAIN-CONTAINING HOMOLOG
Clavulariidae_g23365
Clavulariidae_g23366PROTEASE S8 TRIPEPTIDYL PEPTIDASE I CLN2
Clavulariidae_g23367MONOCARBOXYLATE TRANSPORTER
Clavulariidae_g23368ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g23369SERINE-THREONINE PROTEIN KINASE
Clavulariidae_g2337KINESIN-RELATED
Clavulariidae_g23370RING-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23371ZINC FINGER B-BOX DOMAIN-CONTAINING PROTEIN 1
Clavulariidae_g23372UNCHARACTERIZED
Clavulariidae_g23373
Clavulariidae_g23374VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED
Clavulariidae_g23375CRYPTOCHROME
Clavulariidae_g23376FERM DOMAIN-CONTAINING PROTEIN 4
Clavulariidae_g23377DESMOGLEIN FAMILY MEMBER
Clavulariidae_g23378CADHERIN-23
Clavulariidae_g23379TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g2338KINESIN-RELATED
Clavulariidae_g23380REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23381ZINC FINGER PROTEIN
Clavulariidae_g23382ANOCTAMIN
Clavulariidae_g23383TGF-BETA FAMILY
Clavulariidae_g23384REVERSE TRANSCRIPTASES
Clavulariidae_g23385HISTIDYL-TRNA SYNTHETASE
Clavulariidae_g23386COILED-COIL DOMAIN-CONTAINING PROTEIN 169
Clavulariidae_g23387MAP/MICROTUBULE AFFINITY-REGULATING KINASE
Clavulariidae_g23388E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED
Clavulariidae_g23389EXPRESSED PROTEIN
Clavulariidae_g2339NUCLEOTIDE KINASE
Clavulariidae_g23390
Clavulariidae_g23391
Clavulariidae_g23392PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23393ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23394T CELL-SPECIFIC ADAPTER PROTEIN TSAD
Clavulariidae_g23395
Clavulariidae_g23396PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23397
Clavulariidae_g23398
Clavulariidae_g23399ENDONUCLEASE-RELATED
Clavulariidae_g234TELOMERASE REVERSE TRANSCRIPTASE
Clavulariidae_g2340VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VTA1 HOMOLOG
Clavulariidae_g23400
Clavulariidae_g23401RETROTRANSPOSON
Clavulariidae_g23402REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23403PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23404TYROSINE-PROTEIN KINASE RECEPTOR
Clavulariidae_g23405COLLAGEN ALPHA
Clavulariidae_g23406
Clavulariidae_g23407
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