About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g23633RETROTRANSPOSON
Clavulariidae_g23634RETROTRANSPOSON
Clavulariidae_g23635ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23636SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g23637
Clavulariidae_g23638METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE
Clavulariidae_g23639RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1
Clavulariidae_g2364ZINC FINGER PROTEIN
Clavulariidae_g23640REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23641RETROTRANSPOSON
Clavulariidae_g23642DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g23643REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23644THAP DOMAIN-CONTAINING PROTEIN 2
Clavulariidae_g23645REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g2364652 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Clavulariidae_g23647-
Clavulariidae_g23648
Clavulariidae_g23649PROTEIN CBG26694
Clavulariidae_g2365IMPORTIN ALPHA
Clavulariidae_g23650
Clavulariidae_g23651ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23652
Clavulariidae_g23653IP13529P
Clavulariidae_g23654
Clavulariidae_g23655-
Clavulariidae_g23656ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN
Clavulariidae_g23657PROTEIN CBG26694
Clavulariidae_g23658REVERSE TRANSCRIPTASES
Clavulariidae_g23659ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g2366
Clavulariidae_g23660PROTEIN CBG26694
Clavulariidae_g23661SIMILAR TO RIKEN CDNA E130308A19
Clavulariidae_g23662THREE PRIME REPAIR EXONUCLEASE 1, 2
Clavulariidae_g23663APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
Clavulariidae_g23664ATP-DEPENDENT DNA HELICASE
Clavulariidae_g23665
Clavulariidae_g23666
Clavulariidae_g23667EXPRESSED PROTEIN
Clavulariidae_g23668INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23669EUKARYOTIC ELONGATION FACTOR 2 KINASE-RELATED
Clavulariidae_g2367POU DOMAIN
Clavulariidae_g23670
Clavulariidae_g23671ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23672REVERSE TRANSCRIPTASES
Clavulariidae_g23673ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23674GASTROKINE 1
Clavulariidae_g23675GH11602P
Clavulariidae_g23676PROTEIN CBG23806
Clavulariidae_g23677PROTEIN CBG26694
Clavulariidae_g23678GASTROKINE 1
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