About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g23769
Clavulariidae_g2377SNF2/RAD54 HELICASE FAMILY
Clavulariidae_g23770
Clavulariidae_g23771IGGFC_BINDING DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23772NUCLEAR HORMONE RECEPTOR
Clavulariidae_g23773ANAPHASE PROMOTING COMPLEX SUBUNIT 4 APC4
Clavulariidae_g23774CALPONIN
Clavulariidae_g23775CALPONIN
Clavulariidae_g23776CALPONIN
Clavulariidae_g23777METABOTROPIC GLUTAMATE RECEPTOR
Clavulariidae_g23778ARGININE-TRNA-PROTEIN TRANSFERASE 1
Clavulariidae_g23779ARMADILLO REPEAT CONTAINING 2
Clavulariidae_g2378PALMITOYLTRANSFERASE ZDHHC16
Clavulariidae_g23780SPINDLE AND KINETOCHORE-ASSOCIATED PROTEIN 3
Clavulariidae_g23781INHIBITOR OF APOPTOSIS
Clavulariidae_g23782PREFOLDIN SUBUNIT 3
Clavulariidae_g23783HEADCASE PROTEIN
Clavulariidae_g23784PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED
Clavulariidae_g23785CLATHRIN ASSEMBLY PROTEIN
Clavulariidae_g23786EXPORTIN 4,7-RELATED
Clavulariidae_g23787DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE FAMILY MEMBER
Clavulariidae_g23788WD REPEAT DOMAIN 9
Clavulariidae_g23789
Clavulariidae_g2379BIOTIN PROTEIN LIGASE
Clavulariidae_g23790PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED
Clavulariidae_g23791
Clavulariidae_g23792BUD13 HOMOLOG
Clavulariidae_g23793PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR
Clavulariidae_g23794MERLIN/MOESIN/EZRIN/RADIXIN
Clavulariidae_g23795
Clavulariidae_g23796REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g237971,4-DIHYDROXY-2-NAPHTHOATE OCTAPRENYLTRANSFERASE
Clavulariidae_g237981,4-DIHYDROXY-2-NAPHTHOATE OCTAPRENYLTRANSFERASE
Clavulariidae_g23799ATP-DEPENDENT RNA HELICASE
Clavulariidae_g238REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g2380NISCHARIN RELATED
Clavulariidae_g23800F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g23801RETROTRANSPOSON
Clavulariidae_g23802RETROTRANSPOSON
Clavulariidae_g23803TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g23804NETRIN/LAMININ-RELATED
Clavulariidae_g23805ATP-DEPENDENT RNA HELICASE
Clavulariidae_g23806ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4
Clavulariidae_g23807ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4
Clavulariidae_g23808NETRIN/LAMININ-RELATED
Clavulariidae_g23809-
Clavulariidae_g23815'-AMP-ACTIVATED PROTEIN KINASE , BETA SUBUNIT
Clavulariidae_g23810CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g23811RETROTRANSPOSON
Clavulariidae_g23812HMG DOMAIN-CONTAINING PROTEIN 3
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