Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ～1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
| Gene ID | Description |
|---|---|
| Clavulariidae_g23903 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g23904 | SI:CH211-243P7.3-RELATED |
| Clavulariidae_g23905 | |
| Clavulariidae_g23906 | |
| Clavulariidae_g23907 | SI:CH211-243P7.3-RELATED |
| Clavulariidae_g23908 | TYROSINE-PROTEIN KINASE RECEPTOR |
| Clavulariidae_g23909 | THAP DOMAIN PROTEIN |
| Clavulariidae_g2391 | MANNOSYL-OLIGOSACCHARIDE ALPHA-1,2-MANNOSIDASE-RELATED |
| Clavulariidae_g23910 | |
| Clavulariidae_g23911 | |
| Clavulariidae_g23912 | |
| Clavulariidae_g23913 | POL PROTEIN |
| Clavulariidae_g23914 | PROTEIN CBG26694 |
| Clavulariidae_g23915 | |
| Clavulariidae_g23916 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g23917 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g23918 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g23919 | |
| Clavulariidae_g2392 | CHONDROITIN SYNTHASE |
| Clavulariidae_g23920 | URINARY PROTEIN RUP /ACROSOMAL PROTEIN SP-10 |
| Clavulariidae_g23921 | REVERSE TRANSCRIPTASES |
| Clavulariidae_g23922 | |
| Clavulariidae_g23923 | |
| Clavulariidae_g23924 | SI:CH211-243P7.3-RELATED |
| Clavulariidae_g23925 | |
| Clavulariidae_g23926 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g23927 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g23928 | RETROTRANSPOSON |
| Clavulariidae_g23929 | |
| Clavulariidae_g2393 | TESTIS-EXPRESSED PROTEIN 11 |
| Clavulariidae_g23930 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Clavulariidae_g23931 | SI:DKEY-9I5.2-RELATED |
| Clavulariidae_g23932 | SI:CH211-243P7.3-RELATED |
| Clavulariidae_g23933 | |
| Clavulariidae_g23934 | EXPRESSED PROTEIN |
| Clavulariidae_g23935 | DUF3504 DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g23936 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g23937 | |
| Clavulariidae_g23938 | EXPRESSED PROTEIN |
| Clavulariidae_g23939 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Clavulariidae_g2394 | |
| Clavulariidae_g23940 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Clavulariidae_g23941 | |
| Clavulariidae_g23942 | REVERSE TRANSCRIPTASES |
| Clavulariidae_g23943 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g23944 | PROTEIN CBG26694 |
| Clavulariidae_g23945 | |
| Clavulariidae_g23946 | THAP DOMAIN PROTEIN |
| Clavulariidae_g23947 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| Clavulariidae_g23948 |
