
Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
| Gene ID | Description |
|---|---|
| Clavulariidae_g23859 | SI:CH1073-475A24.1 |
| Clavulariidae_g2386 | SPERMATOGENESIS-ASSOCIATED SERINE-RICH PROTEIN 1 |
| Clavulariidae_g23860 | |
| Clavulariidae_g23861 | TRNA (ADENINE(58)-N(1))-METHYLTRANSFERASE |
| Clavulariidae_g23862 | DYNEIN HEAVY CHAIN |
| Clavulariidae_g23863 | SOLUTE CARRIER FAMILY 22 MEMBER |
| Clavulariidae_g23864 | |
| Clavulariidae_g23865 | |
| Clavulariidae_g23866 | INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED |
| Clavulariidae_g23867 | EXPRESSED PROTEIN |
| Clavulariidae_g23868 | |
| Clavulariidae_g23869 | |
| Clavulariidae_g2387 | SER/THR PROTEIN KINASE-TRB |
| Clavulariidae_g23870 | |
| Clavulariidae_g23871 | |
| Clavulariidae_g23872 | |
| Clavulariidae_g23873 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g23874 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g23875 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN-RELATED |
| Clavulariidae_g23876 | PROTEIN CBG17025 |
| Clavulariidae_g23877 | |
| Clavulariidae_g23878 | CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED |
| Clavulariidae_g23879 | PROTEIN CBG26694 |
| Clavulariidae_g2388 | RWD DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g23880 | PROTEIN CBG26694 |
| Clavulariidae_g23881 | DUF3504 DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g23882 | TRANSPOSABLE ELEMENT TC3 TRANSPOSASE-LIKE PROTEIN |
| Clavulariidae_g23883 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g23884 | |
| Clavulariidae_g23885 | |
| Clavulariidae_g23886 | METHYLTRANSFERASE |
| Clavulariidae_g23887 | PROLYL 4-HYDROXYLASE ALPHA SUBUNIT |
| Clavulariidae_g23888 | PROLYL 4-HYDROXYLASE ALPHA SUBUNIT |
| Clavulariidae_g23889 | 41-2 PROTEIN ANTIGEN-RELATED |
| Clavulariidae_g2389 | PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED |
| Clavulariidae_g23890 | CYTOSOLIC REGULATOR PIANISSIMO |
| Clavulariidae_g23891 | |
| Clavulariidae_g23892 | CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED |
| Clavulariidae_g23893 | |
| Clavulariidae_g23894 | SI:CH211-243P7.3-RELATED |
| Clavulariidae_g23895 | SI:CH211-243P7.3-RELATED |
| Clavulariidae_g23896 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
| Clavulariidae_g23897 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
| Clavulariidae_g23898 | TRANSPOSABLE ELEMENT TC3 TRANSPOSASE-LIKE PROTEIN |
| Clavulariidae_g23899 | SI:CH211-243P7.3-RELATED |
| Clavulariidae_g239 | |
| Clavulariidae_g2390 | INNER MEMBRANE TRANSPORTER YGJI-RELATED |
| Clavulariidae_g23900 | SI:CH211-243P7.3-RELATED |
| Clavulariidae_g23901 | SI:DKEY-9I5.2-RELATED |
| Clavulariidae_g23902 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |