About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g23859SI:CH1073-475A24.1
Clavulariidae_g2386SPERMATOGENESIS-ASSOCIATED SERINE-RICH PROTEIN 1
Clavulariidae_g23860
Clavulariidae_g23861TRNA (ADENINE(58)-N(1))-METHYLTRANSFERASE
Clavulariidae_g23862DYNEIN HEAVY CHAIN
Clavulariidae_g23863SOLUTE CARRIER FAMILY 22 MEMBER
Clavulariidae_g23864
Clavulariidae_g23865
Clavulariidae_g23866INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g23867EXPRESSED PROTEIN
Clavulariidae_g23868
Clavulariidae_g23869
Clavulariidae_g2387SER/THR PROTEIN KINASE-TRB
Clavulariidae_g23870
Clavulariidae_g23871
Clavulariidae_g23872
Clavulariidae_g23873REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23874REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23875ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g23876PROTEIN CBG17025
Clavulariidae_g23877
Clavulariidae_g23878CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED
Clavulariidae_g23879PROTEIN CBG26694
Clavulariidae_g2388RWD DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23880PROTEIN CBG26694
Clavulariidae_g23881DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23882TRANSPOSABLE ELEMENT TC3 TRANSPOSASE-LIKE PROTEIN
Clavulariidae_g23883ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g23884
Clavulariidae_g23885
Clavulariidae_g23886METHYLTRANSFERASE
Clavulariidae_g23887PROLYL 4-HYDROXYLASE ALPHA SUBUNIT
Clavulariidae_g23888PROLYL 4-HYDROXYLASE ALPHA SUBUNIT
Clavulariidae_g2388941-2 PROTEIN ANTIGEN-RELATED
Clavulariidae_g2389PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED
Clavulariidae_g23890CYTOSOLIC REGULATOR PIANISSIMO
Clavulariidae_g23891
Clavulariidae_g23892CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED
Clavulariidae_g23893
Clavulariidae_g23894SI:CH211-243P7.3-RELATED
Clavulariidae_g23895SI:CH211-243P7.3-RELATED
Clavulariidae_g23896HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Clavulariidae_g23897HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Clavulariidae_g23898TRANSPOSABLE ELEMENT TC3 TRANSPOSASE-LIKE PROTEIN
Clavulariidae_g23899SI:CH211-243P7.3-RELATED
Clavulariidae_g239
Clavulariidae_g2390INNER MEMBRANE TRANSPORTER YGJI-RELATED
Clavulariidae_g23900SI:CH211-243P7.3-RELATED
Clavulariidae_g23901SI:DKEY-9I5.2-RELATED
Clavulariidae_g23902ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
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