About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g22058PORCUPINE
Clavulariidae_g22059DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE 48 KDA SUBUNIT
Clavulariidae_g2206PAIRED BOX PROTEIN PAX-6-RELATED-RELATED
Clavulariidae_g22060PUTATIVE ATP-ASE
Clavulariidae_g22061GASTRULATION DEFECTIVE PROTEIN 1-RELATED
Clavulariidae_g22062
Clavulariidae_g22063PHOSPHATIDYLINOSITOL KINASE
Clavulariidae_g22064
Clavulariidae_g220655'->3' EXORIBONUCLEASE
Clavulariidae_g22066SEGMENT POLARITY PROTEIN DISHEVELLED
Clavulariidae_g22067ABC TRANSPORTER G FAMILY MEMBER 28
Clavulariidae_g22068CELLULAR TUMOR ANTIGEN P53
Clavulariidae_g22069LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED
Clavulariidae_g2207SI:CH211-266K2.1
Clavulariidae_g22070F-ACTIN-CAPPING PROTEIN SUBUNIT BETA
Clavulariidae_g22071RIBOSOMAL PROTEIN S6 KINASE
Clavulariidae_g22072
Clavulariidae_g22073BARDET-BIEDL SYNDROME 1 PROTEIN
Clavulariidae_g22074DNA LIGASE 1/3 FAMILY MEMBER
Clavulariidae_g22075UNCHARACTERIZED
Clavulariidae_g22076CELL DIVISION PROTEIN KINASE
Clavulariidae_g22077AURORA KINASE A-INTERACTING PROTEIN
Clavulariidae_g22078ANOCTAMIN
Clavulariidae_g22079
Clavulariidae_g2208ATP-BINDING CASSETTE SUB-FAMILY B
Clavulariidae_g22080PROLINE-RICH TRANSMEMBRANE PROTEIN 4-RELATED
Clavulariidae_g22081
Clavulariidae_g220826-PHOSPHOGLUCONATE DEHYDROGENASE
Clavulariidae_g22083UNCHARACTERIZED
Clavulariidae_g22084ADHESION G-PROTEIN COUPLED RECEPTOR
Clavulariidae_g22085
Clavulariidae_g22086PHOSPHOINOSITIDE 3-KINASE REGULATORY SUBUNIT 4
Clavulariidae_g22087FE2OG DIOXYGENASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g22088CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED
Clavulariidae_g22089SOLUTE CARRIER FAMILY 33 ACETYL-COA TRANSPORTER -RELATED
Clavulariidae_g2209
Clavulariidae_g22090CDNA SEQUENCE BC021608
Clavulariidae_g22091HOMEOBOX PROTEIN ARISTALESS
Clavulariidae_g22092UNCHARACTERIZED
Clavulariidae_g22093CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED
Clavulariidae_g22094TRANSLOCON-ASSOCIATED PROTEIN TRAP , GAMMA SUBUNIT
Clavulariidae_g220952,5-DIKETO-D-GLUCONIC ACID REDUCTASE
Clavulariidae_g22096RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1
Clavulariidae_g22097
Clavulariidae_g22098RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1
Clavulariidae_g22099RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1
Clavulariidae_g221ENDONUCLEASE-RELATED
Clavulariidae_g2210
Clavulariidae_g22100
Clavulariidae_g22101
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