About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g21743ZINC FINGER PROTEIN
Clavulariidae_g21744DED DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21745COILED-COIL DOMAIN-CONTAINING PROTEIN 180
Clavulariidae_g21746TUBERIN
Clavulariidae_g21747UNCHARACTERIZED
Clavulariidae_g21748PROTON CHANNEL OTOP
Clavulariidae_g21749PROTON CHANNEL OTOP
Clavulariidae_g2175DNA REPLICATION REGULATOR DPB11-RELATED
Clavulariidae_g21750PROTON CHANNEL OTOP
Clavulariidae_g21751PEPTIDE CHAIN RELEASE FACTOR
Clavulariidae_g21752MAP/MICROTUBULE AFFINITY-REGULATING KINASE
Clavulariidae_g21753N-ALPHA-ACETYLTRANSFERASE 60
Clavulariidae_g21754DNA-DIRECTED RNA POLYMERASES III 80 KDA POLYPEPTIDE RNA POLYMERASE III SUBUNIT 5
Clavulariidae_g21755
Clavulariidae_g21756TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED
Clavulariidae_g21757
Clavulariidae_g21758
Clavulariidae_g21759WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED
Clavulariidae_g2176HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
Clavulariidae_g21760TRANSMEMBRANE CHANNEL-RELATED
Clavulariidae_g21761TRANSLATION FACTOR
Clavulariidae_g21762
Clavulariidae_g21763MULTICOPPER OXIDASE-RELATED
Clavulariidae_g21764TROPOMYOSIN
Clavulariidae_g21765ET TRANSLATION PRODUCT-RELATED
Clavulariidae_g21766CARDIOLIPIN HYDROLASE
Clavulariidae_g21767EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN
Clavulariidae_g21768INWARD RECTIFIER POTASSIUM CHANNEL
Clavulariidae_g21769INWARD RECTIFIER POTASSIUM CHANNEL
Clavulariidae_g2177TYPE I INOSITOL-1,4,5-TRISPHOSPHATE 5-PHOSPHATASE
Clavulariidae_g21770ACTIN
Clavulariidae_g21771MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 7
Clavulariidae_g21772VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 3A
Clavulariidae_g21773DYNEIN INTERMEDIATE CHAIN
Clavulariidae_g21774EUKARYOTIC TRANSLATION INITIATION FACTOR 2C
Clavulariidae_g21775EUKARYOTIC TRANSLATION INITIATION FACTOR 2C
Clavulariidae_g21776UNCHARACTERIZED
Clavulariidae_g21777KELCH DOMAIN-CONTAINING PROTEIN 9
Clavulariidae_g21778CLUSTERIN ASSOCIATED PROTEIN 1
Clavulariidae_g21779NOVEL ZZ TYPE ZINC FINGER DOMAIN CONTAINING PROTEIN
Clavulariidae_g2178REVERSE TRANSCRIPTASE
Clavulariidae_g21780NUCLEOTIDE-BINDING PROTEIN NBP35 YEAST -RELATED
Clavulariidae_g21781COILED-COIL DOMAIN-CONTAINING PROTEIN 154
Clavulariidae_g21782ASTEROID PROTEIN
Clavulariidae_g21783LD33804P
Clavulariidae_g21784KNIRPS-RELATED PROTEIN-RELATED
Clavulariidae_g21785PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1
Clavulariidae_g21786SPERMATOGENESIS-ASSOCIATED PROTEIN 20
Clavulariidae_g21787CCR4 NOT-RELATED
Clavulariidae_g21788HISTONE H1
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