About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g21699
Clavulariidae_g217RETROTRANSPOSON
Clavulariidae_g2170PROTEIN DPCD
Clavulariidae_g21700RETROTRANSPOSON
Clavulariidae_g21701PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
Clavulariidae_g21702MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD1 MITOTIC ARREST DEFICIENT-LIKE PROTEIN 1
Clavulariidae_g21703INTELECTIN
Clavulariidae_g21704INTELECTIN
Clavulariidae_g21705INTELECTIN
Clavulariidae_g21706PARTNER OF SLD5
Clavulariidae_g21707PEROXISOMAL MEMBRANE PROTEIN PMP34-RELATED
Clavulariidae_g21708POLYCOMB GROUP PROTEIN
Clavulariidae_g21709INTELECTIN
Clavulariidae_g2171MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10
Clavulariidae_g21710LATROPHILIN RECEPTOR-LIKE PROTEIN A
Clavulariidae_g21711GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 4 FAMILY
Clavulariidae_g21712ADHESION G-PROTEIN COUPLED RECEPTOR
Clavulariidae_g21713UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
Clavulariidae_g21714
Clavulariidae_g21715AMELOGENIN
Clavulariidae_g21716AMELOGENIN
Clavulariidae_g21717DNA POLYMERASE
Clavulariidae_g21718
Clavulariidae_g21719
Clavulariidae_g2172BETA-AMYLOID BINDING PROTEIN-RELATED
Clavulariidae_g21720
Clavulariidae_g21721COLLAGEN ALPHA
Clavulariidae_g21722AMELOGENIN
Clavulariidae_g21723
Clavulariidae_g21724AMELOGENIN
Clavulariidae_g21725SLR5058 PROTEIN
Clavulariidae_g21726
Clavulariidae_g21727
Clavulariidae_g21728SLR5058 PROTEIN
Clavulariidae_g21729
Clavulariidae_g2173SYNTAXIN-18
Clavulariidae_g21730
Clavulariidae_g21731
Clavulariidae_g21732
Clavulariidae_g21733RIBOSOME BIOGENESIS PROTEIN TSR3 HOMOLOG
Clavulariidae_g21734XK-RELATED PROTEIN
Clavulariidae_g21735TNF RECEPTOR ASSOCIATED FACTOR
Clavulariidae_g21736TNF RECEPTOR ASSOCIATED FACTOR
Clavulariidae_g21737TNF RECEPTOR ASSOCIATED FACTOR
Clavulariidae_g21738SORTING NEXIN
Clavulariidae_g21739PROTEIN HEATR9
Clavulariidae_g2174
Clavulariidae_g21740ATP-DEPENDENT RNA HELICASE RHLE-RELATED
Clavulariidae_g21741COILED-COIL DOMAIN-CONTAINING PROTEIN 157
Clavulariidae_g21742ZINC FINGER PROTEIN
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