About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g21428EGF-LIKE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21429COLLAGEN ALPHA
Clavulariidae_g2143ATP-DEPENDENT RNA HELICASE DBP3
Clavulariidae_g21430
Clavulariidae_g21431ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21432PROTEIN CBG23764
Clavulariidae_g21433NOTCH LIGAND FAMILY MEMBER
Clavulariidae_g21434REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21435WNT RELATED
Clavulariidae_g21436FI01459P
Clavulariidae_g21437NEDD4 FAMILY INTERACTING PROTEIN 1/2
Clavulariidae_g21438HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN-RELATED
Clavulariidae_g21439SODIUM/DICARBOXYLATE SYMPORTER-RELATED
Clavulariidae_g2144VEZATIN
Clavulariidae_g21440
Clavulariidae_g21441
Clavulariidae_g21442UNCHARACTERIZED
Clavulariidae_g21443NOTCH LIGAND FAMILY MEMBER
Clavulariidae_g21444NOTCH LIGAND FAMILY MEMBER
Clavulariidae_g21445NOTCH LIGAND FAMILY MEMBER
Clavulariidae_g21446SEPTIN
Clavulariidae_g21447REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21448TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g21449REVERSE TRANSCRIPTASES
Clavulariidae_g2145COILED-COIL DOMAIN-CONTAINING PROTEIN 172
Clavulariidae_g21450MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Clavulariidae_g21451REVERSE TRANSCRIPTASES
Clavulariidae_g21452ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21453MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Clavulariidae_g21454
Clavulariidae_g21455UNCHARACTERIZED
Clavulariidae_g21456UNCHARACTERIZED
Clavulariidae_g21457
Clavulariidae_g21458
Clavulariidae_g21459TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g2146CHIMERIN FAMILY MEMBER
Clavulariidae_g21460UNCHARACTERIZED
Clavulariidae_g21461UNCHARACTERIZED
Clavulariidae_g21462FORMIMINOTRANSFERASE-CYCLODEAMINASE
Clavulariidae_g21463METABOTROPIC GLUTAMATE RECEPTOR
Clavulariidae_g21464METABOTROPIC GLUTAMATE RECEPTOR
Clavulariidae_g21465TRANSCRIPTION FACTOR CP2
Clavulariidae_g21466DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER
Clavulariidae_g21467ZINC FINGER PROTEIN
Clavulariidae_g21468NUCLEAR FACTOR ERYTHROID 2-RELATED FACTOR
Clavulariidae_g21469PENICILLIN-BINDING PROTEIN
Clavulariidae_g2147
Clavulariidae_g21470
Clavulariidae_g21471
Clavulariidae_g21472
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