Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g21428 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g21429 | COLLAGEN ALPHA |
Clavulariidae_g2143 | ATP-DEPENDENT RNA HELICASE DBP3 |
Clavulariidae_g21430 | |
Clavulariidae_g21431 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g21432 | PROTEIN CBG23764 |
Clavulariidae_g21433 | NOTCH LIGAND FAMILY MEMBER |
Clavulariidae_g21434 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g21435 | WNT RELATED |
Clavulariidae_g21436 | FI01459P |
Clavulariidae_g21437 | NEDD4 FAMILY INTERACTING PROTEIN 1/2 |
Clavulariidae_g21438 | HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN-RELATED |
Clavulariidae_g21439 | SODIUM/DICARBOXYLATE SYMPORTER-RELATED |
Clavulariidae_g2144 | VEZATIN |
Clavulariidae_g21440 | |
Clavulariidae_g21441 | |
Clavulariidae_g21442 | UNCHARACTERIZED |
Clavulariidae_g21443 | NOTCH LIGAND FAMILY MEMBER |
Clavulariidae_g21444 | NOTCH LIGAND FAMILY MEMBER |
Clavulariidae_g21445 | NOTCH LIGAND FAMILY MEMBER |
Clavulariidae_g21446 | SEPTIN |
Clavulariidae_g21447 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g21448 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g21449 | REVERSE TRANSCRIPTASES |
Clavulariidae_g2145 | COILED-COIL DOMAIN-CONTAINING PROTEIN 172 |
Clavulariidae_g21450 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
Clavulariidae_g21451 | REVERSE TRANSCRIPTASES |
Clavulariidae_g21452 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g21453 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
Clavulariidae_g21454 | |
Clavulariidae_g21455 | UNCHARACTERIZED |
Clavulariidae_g21456 | UNCHARACTERIZED |
Clavulariidae_g21457 | |
Clavulariidae_g21458 | |
Clavulariidae_g21459 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g2146 | CHIMERIN FAMILY MEMBER |
Clavulariidae_g21460 | UNCHARACTERIZED |
Clavulariidae_g21461 | UNCHARACTERIZED |
Clavulariidae_g21462 | FORMIMINOTRANSFERASE-CYCLODEAMINASE |
Clavulariidae_g21463 | METABOTROPIC GLUTAMATE RECEPTOR |
Clavulariidae_g21464 | METABOTROPIC GLUTAMATE RECEPTOR |
Clavulariidae_g21465 | TRANSCRIPTION FACTOR CP2 |
Clavulariidae_g21466 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
Clavulariidae_g21467 | ZINC FINGER PROTEIN |
Clavulariidae_g21468 | NUCLEAR FACTOR ERYTHROID 2-RELATED FACTOR |
Clavulariidae_g21469 | PENICILLIN-BINDING PROTEIN |
Clavulariidae_g2147 | |
Clavulariidae_g21470 | |
Clavulariidae_g21471 | |
Clavulariidae_g21472 |