About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g21248DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER
Clavulariidae_g21249
Clavulariidae_g2125UBIQUITIN-LIKE DOMAIN-CONTAINING CTD PHOSPHATASE 1
Clavulariidae_g21250
Clavulariidae_g21251REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21252THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g21253REVERSE TRANSCRIPTASES
Clavulariidae_g21254PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21255PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21256
Clavulariidae_g21257
Clavulariidae_g21258DENN DOMAIN-CONTAINING PROTEIN 4
Clavulariidae_g21259THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g2126NOP14
Clavulariidae_g21260
Clavulariidae_g21261
Clavulariidae_g21262DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
Clavulariidae_g21263
Clavulariidae_g21264PROTEIN CBG23764
Clavulariidae_g21265COLLAGEN ALPHA
Clavulariidae_g21266
Clavulariidae_g21267
Clavulariidae_g21268
Clavulariidae_g21269BONUS, ISOFORM C-RELATED
Clavulariidae_g2127UNCHARACTERIZED
Clavulariidae_g21270TARGETING PROTEIN FOR XKLP2
Clavulariidae_g21271PROLYL 4-HYDROXYLASE ALPHA SUBUNIT
Clavulariidae_g21272RETROTRANSPOSON
Clavulariidae_g21273
Clavulariidae_g21274SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED
Clavulariidae_g21275
Clavulariidae_g21276PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21277RETROTRANSPOSON
Clavulariidae_g21278
Clavulariidae_g21279
Clavulariidae_g2128POTASSIUM CHANNEL, SUBFAMILY K
Clavulariidae_g21280
Clavulariidae_g21281
Clavulariidae_g21282
Clavulariidae_g21283
Clavulariidae_g21284DIHYDROOROTASE-RELATED
Clavulariidae_g21285
Clavulariidae_g21286PROTEIN CBG26694
Clavulariidae_g21287
Clavulariidae_g21288
Clavulariidae_g21289NUCLEOLAR AND SPINDLE-ASSOCIATED PROTEIN 1
Clavulariidae_g2129POTASSIUM CHANNEL, SUBFAMILY K
Clavulariidae_g21290TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g21291KELCH PROTEIN
Clavulariidae_g21292
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