About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g21202DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED
Clavulariidae_g21203
Clavulariidae_g21204COLLAGEN ALPHA
Clavulariidae_g21205
Clavulariidae_g21206
Clavulariidae_g21207
Clavulariidae_g21208DNA POLYMERASE
Clavulariidae_g21209SI:DKEY-29D5.2
Clavulariidae_g2121PROTEIN O-MANNOSYL-TRANSFERASE TMTC2
Clavulariidae_g21210
Clavulariidae_g21211
Clavulariidae_g21212PROTEIN B, PUTATIVE-RELATED-RELATED
Clavulariidae_g21213PROTEIN B, PUTATIVE-RELATED-RELATED
Clavulariidae_g21214PROTEIN CBG26694
Clavulariidae_g21215
Clavulariidae_g21216HMG DOMAIN-CONTAINING PROTEIN 3
Clavulariidae_g21217
Clavulariidae_g21218REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21219L1 TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g2122UNCHARACTERIZED
Clavulariidae_g21220ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21221COLLAGEN ALPHA
Clavulariidae_g21222
Clavulariidae_g21223REVERSE TRANSCRIPTASES
Clavulariidae_g21224RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR COMPLEX SUBUNIT
Clavulariidae_g21225
Clavulariidae_g21226
Clavulariidae_g21227
Clavulariidae_g21228
Clavulariidae_g21229REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g2123MAINTENANCE OF KILLER 16 MAK16 PROTEIN-RELATED
Clavulariidae_g21230
Clavulariidae_g21231COLLAGEN ALPHA
Clavulariidae_g21232
Clavulariidae_g21233
Clavulariidae_g21234SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g21235SENTRIN/SUMO-SPECIFIC PROTEASE
Clavulariidae_g21236ANILLIN/RHOTEKIN RTKN
Clavulariidae_g21237
Clavulariidae_g21238EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED
Clavulariidae_g21239ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4
Clavulariidae_g2124TETRATRICOPEPTIDE REPEAT PROTEIN 23
Clavulariidae_g21240VITAMIN K-DEPENDENT GAMMA-CARBOXYLASE
Clavulariidae_g21241PHOSPHOLIPASE B, PLB1
Clavulariidae_g21242RETROTRANSPOSON
Clavulariidae_g21243UNCHARACTERIZED
Clavulariidae_g21244PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21245RETROTRANSPOSON
Clavulariidae_g21246PROTEIN REGULATOR OF CYTOKINESIS 1 PRC1-RELATED
Clavulariidae_g2124739S RIBOSOMAL PROTEIN L28, MITOCHONDRIAL
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