Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g21202 | DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED |
Clavulariidae_g21203 | |
Clavulariidae_g21204 | COLLAGEN ALPHA |
Clavulariidae_g21205 | |
Clavulariidae_g21206 | |
Clavulariidae_g21207 | |
Clavulariidae_g21208 | DNA POLYMERASE |
Clavulariidae_g21209 | SI:DKEY-29D5.2 |
Clavulariidae_g2121 | PROTEIN O-MANNOSYL-TRANSFERASE TMTC2 |
Clavulariidae_g21210 | |
Clavulariidae_g21211 | |
Clavulariidae_g21212 | PROTEIN B, PUTATIVE-RELATED-RELATED |
Clavulariidae_g21213 | PROTEIN B, PUTATIVE-RELATED-RELATED |
Clavulariidae_g21214 | PROTEIN CBG26694 |
Clavulariidae_g21215 | |
Clavulariidae_g21216 | HMG DOMAIN-CONTAINING PROTEIN 3 |
Clavulariidae_g21217 | |
Clavulariidae_g21218 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g21219 | L1 TRANSPOSABLE ELEMENT-RELATED |
Clavulariidae_g2122 | UNCHARACTERIZED |
Clavulariidae_g21220 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g21221 | COLLAGEN ALPHA |
Clavulariidae_g21222 | |
Clavulariidae_g21223 | REVERSE TRANSCRIPTASES |
Clavulariidae_g21224 | RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR COMPLEX SUBUNIT |
Clavulariidae_g21225 | |
Clavulariidae_g21226 | |
Clavulariidae_g21227 | |
Clavulariidae_g21228 | |
Clavulariidae_g21229 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g2123 | MAINTENANCE OF KILLER 16 MAK16 PROTEIN-RELATED |
Clavulariidae_g21230 | |
Clavulariidae_g21231 | COLLAGEN ALPHA |
Clavulariidae_g21232 | |
Clavulariidae_g21233 | |
Clavulariidae_g21234 | SI:CH211-108C17.2-RELATED-RELATED |
Clavulariidae_g21235 | SENTRIN/SUMO-SPECIFIC PROTEASE |
Clavulariidae_g21236 | ANILLIN/RHOTEKIN RTKN |
Clavulariidae_g21237 | |
Clavulariidae_g21238 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED |
Clavulariidae_g21239 | ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4 |
Clavulariidae_g2124 | TETRATRICOPEPTIDE REPEAT PROTEIN 23 |
Clavulariidae_g21240 | VITAMIN K-DEPENDENT GAMMA-CARBOXYLASE |
Clavulariidae_g21241 | PHOSPHOLIPASE B, PLB1 |
Clavulariidae_g21242 | RETROTRANSPOSON |
Clavulariidae_g21243 | UNCHARACTERIZED |
Clavulariidae_g21244 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g21245 | RETROTRANSPOSON |
Clavulariidae_g21246 | PROTEIN REGULATOR OF CYTOKINESIS 1 PRC1-RELATED |
Clavulariidae_g21247 | 39S RIBOSOMAL PROTEIN L28, MITOCHONDRIAL |