Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g21518 | DUF3504 DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g21519 | MYOTUBULARIN-RELATED |
Clavulariidae_g2152 | CASEIN KINASE-RELATED |
Clavulariidae_g21520 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g21521 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g21522 | REVERSE TRANSCRIPTASES |
Clavulariidae_g21523 | |
Clavulariidae_g21524 | 15-HYDROXYPROSTAGLANDIN DEHYDROGENASE [NAD(+)] |
Clavulariidae_g21525 | |
Clavulariidae_g21526 | RETROTRANSPOSON |
Clavulariidae_g21527 | 15-HYDROXYPROSTAGLANDIN DEHYDROGENASE [NAD(+)] |
Clavulariidae_g21528 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
Clavulariidae_g21529 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g2153 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYLTRANSFERASE |
Clavulariidae_g21530 | CYSTEINE-RICH MOTOR NEURON 1 PROTEIN |
Clavulariidae_g21531 | ZINC FINGER PROTEIN |
Clavulariidae_g21532 | ZINC FINGER AND BTB DOMAIN-CONTAINING |
Clavulariidae_g21533 | AMINO ACID TRANSPORTER |
Clavulariidae_g21534 | PUTATIVE-RELATED |
Clavulariidae_g21535 | |
Clavulariidae_g21536 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
Clavulariidae_g21537 | PROTEIN CBG26694 |
Clavulariidae_g21538 | PROTEIN CBG26694 |
Clavulariidae_g21539 | DUF3504 DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g2154 | PX DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g21540 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
Clavulariidae_g21541 | |
Clavulariidae_g21542 | AMINO ACID TRANSPORTER |
Clavulariidae_g21543 | PYRAZINAMIDASE/NICOTINAMIDASE |
Clavulariidae_g21544 | REVERSE TRANSCRIPTASES |
Clavulariidae_g21545 | |
Clavulariidae_g21546 | |
Clavulariidae_g21547 | |
Clavulariidae_g21548 | |
Clavulariidae_g21549 | |
Clavulariidae_g2155 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g21550 | SODIUM/DICARBOXYLATE SYMPORTER-RELATED |
Clavulariidae_g21551 | SODIUM/DICARBOXYLATE SYMPORTER-RELATED |
Clavulariidae_g21552 | SIMILAR TO RIKEN CDNA E130308A19 |
Clavulariidae_g21553 | |
Clavulariidae_g21554 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g21555 | SODIUM/DICARBOXYLATE SYMPORTER-RELATED |
Clavulariidae_g21556 | |
Clavulariidae_g21557 | |
Clavulariidae_g21558 | SODIUM/DICARBOXYLATE SYMPORTER-RELATED |
Clavulariidae_g21559 | SODIUM/DICARBOXYLATE SYMPORTER-RELATED |
Clavulariidae_g2156 | EXPRESSED PROTEIN |
Clavulariidae_g21560 | CLATHRIN HEAVY CHAIN RELATED |
Clavulariidae_g21561 | HTH CENPB-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g21562 | PX DOMAIN-CONTAINING PROTEIN |