About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g21518DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21519MYOTUBULARIN-RELATED
Clavulariidae_g2152CASEIN KINASE-RELATED
Clavulariidae_g21520REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21521REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21522REVERSE TRANSCRIPTASES
Clavulariidae_g21523
Clavulariidae_g2152415-HYDROXYPROSTAGLANDIN DEHYDROGENASE [NAD(+)]
Clavulariidae_g21525
Clavulariidae_g21526RETROTRANSPOSON
Clavulariidae_g2152715-HYDROXYPROSTAGLANDIN DEHYDROGENASE [NAD(+)]
Clavulariidae_g21528ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
Clavulariidae_g21529REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g2153NICOTINAMIDE MONONUCLEOTIDE ADENYLYLTRANSFERASE
Clavulariidae_g21530CYSTEINE-RICH MOTOR NEURON 1 PROTEIN
Clavulariidae_g21531ZINC FINGER PROTEIN
Clavulariidae_g21532ZINC FINGER AND BTB DOMAIN-CONTAINING
Clavulariidae_g21533AMINO ACID TRANSPORTER
Clavulariidae_g21534PUTATIVE-RELATED
Clavulariidae_g21535
Clavulariidae_g2153652 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Clavulariidae_g21537PROTEIN CBG26694
Clavulariidae_g21538PROTEIN CBG26694
Clavulariidae_g21539DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g2154PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21540OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
Clavulariidae_g21541
Clavulariidae_g21542AMINO ACID TRANSPORTER
Clavulariidae_g21543PYRAZINAMIDASE/NICOTINAMIDASE
Clavulariidae_g21544REVERSE TRANSCRIPTASES
Clavulariidae_g21545
Clavulariidae_g21546
Clavulariidae_g21547
Clavulariidae_g21548
Clavulariidae_g21549
Clavulariidae_g2155ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21550SODIUM/DICARBOXYLATE SYMPORTER-RELATED
Clavulariidae_g21551SODIUM/DICARBOXYLATE SYMPORTER-RELATED
Clavulariidae_g21552SIMILAR TO RIKEN CDNA E130308A19
Clavulariidae_g21553
Clavulariidae_g21554REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21555SODIUM/DICARBOXYLATE SYMPORTER-RELATED
Clavulariidae_g21556
Clavulariidae_g21557
Clavulariidae_g21558SODIUM/DICARBOXYLATE SYMPORTER-RELATED
Clavulariidae_g21559SODIUM/DICARBOXYLATE SYMPORTER-RELATED
Clavulariidae_g2156EXPRESSED PROTEIN
Clavulariidae_g21560CLATHRIN HEAVY CHAIN RELATED
Clavulariidae_g21561HTH CENPB-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g21562PX DOMAIN-CONTAINING PROTEIN
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