About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g20799PROTEIN CBG26694
Clavulariidae_g208
Clavulariidae_g2080PROLYL 4-HYDROXYLASE ALPHA SUBUNIT
Clavulariidae_g20800ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g20801RETROTRANSPOSON
Clavulariidae_g20802ASPARTYL/LYSYL-TRNA SYNTHETASE
Clavulariidae_g20803ZGC:195170
Clavulariidae_g20804SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g20805THAP DOMAIN-CONTAINING
Clavulariidae_g20806PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20807THAP DOMAIN PROTEIN
Clavulariidae_g20808ATP-DEPENDENT DNA HELICASE
Clavulariidae_g20809DNA POLYMERASE SUBUNIT GAMMA-1
Clavulariidae_g2081PROLYL 4-HYDROXYLASE ALPHA SUBUNIT
Clavulariidae_g20810DNA POLYMERASE SUBUNIT GAMMA-1
Clavulariidae_g20811
Clavulariidae_g20812
Clavulariidae_g20813
Clavulariidae_g20814PROTEIN CBG23764
Clavulariidae_g20815INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g20816ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20817
Clavulariidae_g20818
Clavulariidae_g20819
Clavulariidae_g2082CNH DOMAIN CONTAINING
Clavulariidae_g20820
Clavulariidae_g20821DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g20822DNA POLYMERASE SUBUNIT GAMMA-1
Clavulariidae_g20823ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20824
Clavulariidae_g20825
Clavulariidae_g20826DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g20827DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g20828
Clavulariidae_g20829
Clavulariidae_g2083GLUTAREDOXIN FAMILY MEMBER
Clavulariidae_g20830
Clavulariidae_g20831DNA POLYMERASE SUBUNIT GAMMA-1
Clavulariidae_g20832RETROTRANSPOSON
Clavulariidae_g20833DNA POLYMERASE SUBUNIT GAMMA-1
Clavulariidae_g20834DNA POLYMERASE SUBUNIT GAMMA-1
Clavulariidae_g20835
Clavulariidae_g20836
Clavulariidae_g20837PROTON CHANNEL OTOP
Clavulariidae_g20838PROTON CHANNEL OTOP
Clavulariidae_g20839RAS-LIKE FAMILY MEMBER 11
Clavulariidae_g2084
Clavulariidae_g20840EUKARYOTIC ELONGATION FACTOR 2 KINASE-RELATED
Clavulariidae_g20841EXPRESSED PROTEIN
Clavulariidae_g20842SULFOTRANSFERASE SULT
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