About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g20258
Clavulariidae_g20259REVERSE TRANSCRIPTASES
Clavulariidae_g2026LUPUS LA PROTEIN-RELATED
Clavulariidae_g20260
Clavulariidae_g20261
Clavulariidae_g20262
Clavulariidae_g20263
Clavulariidae_g20264REVERSE TRANSCRIPTASES
Clavulariidae_g20265
Clavulariidae_g20266EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20267THAP DOMAIN PROTEIN
Clavulariidae_g20268REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20269EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Clavulariidae_g2027DRAB11-RELATED
Clavulariidae_g20270THAP DOMAIN PROTEIN
Clavulariidae_g20271PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20272REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20273RETROTRANSPOSON
Clavulariidae_g20274RETROTRANSPOSON
Clavulariidae_g20275MULTICOPPER OXIDASE-RELATED
Clavulariidae_g20276ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20277REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20278
Clavulariidae_g20279REVERSE TRANSCRIPTASES
Clavulariidae_g2028RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING
Clavulariidae_g20280ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g20281SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g20282MULTICOPPER OXIDASE-RELATED
Clavulariidae_g20283UNCHARACTERIZED
Clavulariidae_g20284CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR
Clavulariidae_g20285E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED
Clavulariidae_g20286ZINC FINGER PROTEIN
Clavulariidae_g20287RHO FAMILY GTPASE
Clavulariidae_g20288TYROSINE-PROTEIN KINASE RECEPTOR
Clavulariidae_g20289RETROTRANSPOSON
Clavulariidae_g2029SMOOTH MUSCLE MYOSIN HEAVY CHAIN-RELATED
Clavulariidae_g20290POL PROTEIN
Clavulariidae_g20291
Clavulariidae_g20292DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A
Clavulariidae_g20293REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20294THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g20295PROTEIN CBG26694
Clavulariidae_g20296
Clavulariidae_g20297REVERSE TRANSCRIPTASES
Clavulariidae_g20298REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g20299
Clavulariidae_g203
Clavulariidae_g2030RIBONUCLEASE
Clavulariidae_g20300MULTICOPPER OXIDASE-RELATED
Clavulariidae_g20301THREE PRIME REPAIR EXONUCLEASE 1, 2
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