Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ～1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
| Gene ID | Description |
|---|---|
| Clavulariidae_g15083 | UNCHARACTERIZED |
| Clavulariidae_g15084 | |
| Clavulariidae_g15085 | UNCHARACTERIZED |
| Clavulariidae_g15086 | INTELECTIN |
| Clavulariidae_g15087 | |
| Clavulariidae_g15088 | EGF-LIKE-DOMAIN, MULTIPLE 7, 8 |
| Clavulariidae_g15089 | |
| Clavulariidae_g1509 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| Clavulariidae_g15090 | |
| Clavulariidae_g15091 | |
| Clavulariidae_g15092 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g15093 | |
| Clavulariidae_g15094 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g15095 | PROTEIN BARK BEETLE |
| Clavulariidae_g15096 | PROTEIN BARK BEETLE |
| Clavulariidae_g15097 | |
| Clavulariidae_g15098 | ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN |
| Clavulariidae_g15099 | C2H2-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g151 | RETROTRANSPOSON |
| Clavulariidae_g1510 | RHO-GTPASE-ACTIVATING PROTEIN LRG1 |
| Clavulariidae_g15100 | RETROTRANSPOSON |
| Clavulariidae_g15101 | BASIC LEUCINE ZIPPER NUCLEAR FACTOR 1 BLZF1 PROTEIN |
| Clavulariidae_g15102 | |
| Clavulariidae_g15103 | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING |
| Clavulariidae_g15104 | |
| Clavulariidae_g15105 | EGF-LIKE-DOMAIN, MULTIPLE 7, 8 |
| Clavulariidae_g15106 | PROTEIN BARK BEETLE |
| Clavulariidae_g15107 | ATP-DEPENDENT DNA HELICASE |
| Clavulariidae_g15108 | PROTEIN BARK BEETLE |
| Clavulariidae_g15109 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g1511 | RETROTRANSPOSON |
| Clavulariidae_g15110 | REVERSE TRANSCRIPTASES |
| Clavulariidae_g15111 | THAP DOMAIN PROTEIN |
| Clavulariidae_g15112 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g15113 | REVERSE TRANSCRIPTASES |
| Clavulariidae_g15114 | PROTEIN BARK BEETLE |
| Clavulariidae_g15115 | |
| Clavulariidae_g15116 | PROTEIN BARK BEETLE |
| Clavulariidae_g15117 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g15118 | |
| Clavulariidae_g15119 | SH2 DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g1512 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g15120 | DNA HELICASE RECQ FAMILY MEMBER |
| Clavulariidae_g15121 | |
| Clavulariidae_g15122 | |
| Clavulariidae_g15123 | PROTEIN DD3-3 |
| Clavulariidae_g15124 | |
| Clavulariidae_g15125 | |
| Clavulariidae_g15126 | |
| Clavulariidae_g15127 | PROTEIN DD3-3 |
