About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g14949REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1495MULTI-COPPER OXIDASE
Clavulariidae_g14950REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14951ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14952TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g14953REVERSE TRANSCRIPTASES
Clavulariidae_g14954PROTEIN CBG26694
Clavulariidae_g14955PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14956ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g14957RETROTRANSPOSON
Clavulariidae_g14958CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g14959SOLUTE CARRIER FAMILY 10 MEMBER 7
Clavulariidae_g1496MULTI-COPPER OXIDASE
Clavulariidae_g14960
Clavulariidae_g14961CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g14962LIPOXYGENASE
Clavulariidae_g14963REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14964REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14965SOLUTE CARRIER FAMILY 10 MEMBER 7
Clavulariidae_g14966SOLUTE CARRIER FAMILY 10 MEMBER 7
Clavulariidae_g14967SOLUTE CARRIER FAMILY 10 MEMBER 7
Clavulariidae_g14968THAP DOMAIN PROTEIN
Clavulariidae_g14969ATP-DEPENDENT DNA HELICASE
Clavulariidae_g1497LUNG ADENOMA SUSCEPTIBILITY 1-RELATED
Clavulariidae_g14970CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE
Clavulariidae_g14971
Clavulariidae_g14972CYTOCHROME P450 FAMILY 46 SUBFAMILY A
Clavulariidae_g14973
Clavulariidae_g14974NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
Clavulariidae_g14975
Clavulariidae_g14976EG:EG0003.4 PROTEIN-RELATED
Clavulariidae_g14977DYNEIN REGULATORY COMPLEX PROTEIN 9
Clavulariidae_g14978G PATCH DOMAIN-CONTAINING PROTEIN 1
Clavulariidae_g14979INTELECTIN
Clavulariidae_g1498RING FINGER PROTEIN 17
Clavulariidae_g14980
Clavulariidae_g14981CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g14982
Clavulariidae_g14983RETROTRANSPOSON
Clavulariidae_g14984PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14985
Clavulariidae_g14986MATRIX PROTEIN, PUTATIVE-RELATED
Clavulariidae_g14987RAS-RELATED PROTEIN RAB
Clavulariidae_g14988NFAT
Clavulariidae_g14989TRANSMEMBRANE PROTEIN HTP-1 RELATED
Clavulariidae_g1499ATP-DEPENDENT DNA HELICASE
Clavulariidae_g14990
Clavulariidae_g14991
Clavulariidae_g14992
Clavulariidae_g14993
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