Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g14949 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g1495 | MULTI-COPPER OXIDASE |
Clavulariidae_g14950 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g14951 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g14952 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g14953 | REVERSE TRANSCRIPTASES |
Clavulariidae_g14954 | PROTEIN CBG26694 |
Clavulariidae_g14955 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g14956 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g14957 | RETROTRANSPOSON |
Clavulariidae_g14958 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g14959 | SOLUTE CARRIER FAMILY 10 MEMBER 7 |
Clavulariidae_g1496 | MULTI-COPPER OXIDASE |
Clavulariidae_g14960 | |
Clavulariidae_g14961 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g14962 | LIPOXYGENASE |
Clavulariidae_g14963 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g14964 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g14965 | SOLUTE CARRIER FAMILY 10 MEMBER 7 |
Clavulariidae_g14966 | SOLUTE CARRIER FAMILY 10 MEMBER 7 |
Clavulariidae_g14967 | SOLUTE CARRIER FAMILY 10 MEMBER 7 |
Clavulariidae_g14968 | THAP DOMAIN PROTEIN |
Clavulariidae_g14969 | ATP-DEPENDENT DNA HELICASE |
Clavulariidae_g1497 | LUNG ADENOMA SUSCEPTIBILITY 1-RELATED |
Clavulariidae_g14970 | CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE |
Clavulariidae_g14971 | |
Clavulariidae_g14972 | CYTOCHROME P450 FAMILY 46 SUBFAMILY A |
Clavulariidae_g14973 | |
Clavulariidae_g14974 | NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED |
Clavulariidae_g14975 | |
Clavulariidae_g14976 | EG:EG0003.4 PROTEIN-RELATED |
Clavulariidae_g14977 | DYNEIN REGULATORY COMPLEX PROTEIN 9 |
Clavulariidae_g14978 | G PATCH DOMAIN-CONTAINING PROTEIN 1 |
Clavulariidae_g14979 | INTELECTIN |
Clavulariidae_g1498 | RING FINGER PROTEIN 17 |
Clavulariidae_g14980 | |
Clavulariidae_g14981 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g14982 | |
Clavulariidae_g14983 | RETROTRANSPOSON |
Clavulariidae_g14984 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g14985 | |
Clavulariidae_g14986 | MATRIX PROTEIN, PUTATIVE-RELATED |
Clavulariidae_g14987 | RAS-RELATED PROTEIN RAB |
Clavulariidae_g14988 | NFAT |
Clavulariidae_g14989 | TRANSMEMBRANE PROTEIN HTP-1 RELATED |
Clavulariidae_g1499 | ATP-DEPENDENT DNA HELICASE |
Clavulariidae_g14990 | |
Clavulariidae_g14991 | |
Clavulariidae_g14992 | |
Clavulariidae_g14993 |