About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g14813STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE
Clavulariidae_g14814POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING
Clavulariidae_g14815TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g14816L1 TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g14817ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14818INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g14819POLYGLUTAMINE SYNTHESIS ACCESSORY PROTEIN RV0574C-RELATED
Clavulariidae_g1482RESPIRATORY NITRATE REDUCTASE
Clavulariidae_g14820TBC1 DOMAIN FAMILY MEMBER 19
Clavulariidae_g14821PAIRED IMMUNOGLOBULIN-LIKE TYPE 2 RECEPTOR
Clavulariidae_g14822ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14823
Clavulariidae_g14824PROTEIN CBG26694
Clavulariidae_g14825TOL-PAL SYSTEM PROTEIN TOLA
Clavulariidae_g14826ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14827CYTOCHROME P450 FAMILY 4
Clavulariidae_g14828-
Clavulariidae_g14829TYROSINE-PROTEIN KINASE RECEPTOR
Clavulariidae_g1483RIBOSOMAL PROTEIN L2
Clavulariidae_g14830OS02G0260700 PROTEIN
Clavulariidae_g14831CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS
Clavulariidae_g14832EXPRESSED PROTEIN
Clavulariidae_g14833FAS-ASSOCIATED PROTEIN
Clavulariidae_g14834DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
Clavulariidae_g14835
Clavulariidae_g14836RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14837MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2
Clavulariidae_g14838TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN
Clavulariidae_g14839
Clavulariidae_g1484ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14840METHYLTRANSFERASE
Clavulariidae_g14841CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g14842LD33695P
Clavulariidae_g14843ACYL-COA SYNTHETASE
Clavulariidae_g14844CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g14845REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14846ACYL-COA SYNTHETASE
Clavulariidae_g14847REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14848
Clavulariidae_g14849
Clavulariidae_g1485REVERSE TRANSCRIPTASES
Clavulariidae_g14850
Clavulariidae_g14851PROTEIN CBG26694
Clavulariidae_g14852PROTEIN CBG26694
Clavulariidae_g14853SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA
Clavulariidae_g14854NNP-1 PROTEIN NOVEL NUCLEAR PROTEIN 1 NOP52
Clavulariidae_g14855
Clavulariidae_g14856AMINO ACID TRANSPORTER
Clavulariidae_g1485752 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Clavulariidae_g14858THAP DOMAIN PROTEIN
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