Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ～1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
| Gene ID | Description |
|---|---|
| Clavulariidae_g13643 | |
| Clavulariidae_g13644 | |
| Clavulariidae_g13645 | |
| Clavulariidae_g13646 | AGAP001331-PA-RELATED |
| Clavulariidae_g13647 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13648 | DUF3504 DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13649 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g1365 | |
| Clavulariidae_g13650 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13651 | RETROTRANSPOSON |
| Clavulariidae_g13652 | |
| Clavulariidae_g13653 | INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED |
| Clavulariidae_g13654 | |
| Clavulariidae_g13655 | |
| Clavulariidae_g13656 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
| Clavulariidae_g13657 | |
| Clavulariidae_g13658 | |
| Clavulariidae_g13659 | |
| Clavulariidae_g1366 | CYTOCHROME P450 508A4-RELATED |
| Clavulariidae_g13660 | |
| Clavulariidae_g13661 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Clavulariidae_g13662 | |
| Clavulariidae_g13663 | PX DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13664 | DUF3504 DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13665 | F-BOX ONLY PROTEIN |
| Clavulariidae_g13666 | TPR REPEAT CONTAINING PROTEIN |
| Clavulariidae_g13667 | |
| Clavulariidae_g13668 | RETROTRANSPOSON |
| Clavulariidae_g13669 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g1367 | |
| Clavulariidae_g13670 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Clavulariidae_g13671 | DNA POLYMERASE |
| Clavulariidae_g13672 | THAP DOMAIN PROTEIN |
| Clavulariidae_g13673 | PROTEIN CBG26694 |
| Clavulariidae_g13674 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| Clavulariidae_g13675 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN-RELATED |
| Clavulariidae_g13676 | |
| Clavulariidae_g13677 | RETROTRANSPOSON |
| Clavulariidae_g13678 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13679 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| Clavulariidae_g1368 | RETROTRANSPOSON |
| Clavulariidae_g13680 | PROTEIN CBG10425 |
| Clavulariidae_g13681 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13682 | THAP DOMAIN PROTEIN |
| Clavulariidae_g13683 | RETROTRANSPOSON |
| Clavulariidae_g13684 | RETROTRANSPOSON |
| Clavulariidae_g13685 | |
| Clavulariidae_g13686 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
| Clavulariidae_g13687 | |
| Clavulariidae_g13688 | KERATIN, ULTRA HIGH-SULFUR MATRIX PROTEIN-LIKE |
